Ligand clusters for UniProt code Q08603

Ligand clusters for Q08603: Geranylgeranyl transferase type-2 subunit beta from Rattus norvegicus

		3 ligand clusters Cluster 1. 19 ligand types 46 ligands Cluster 2. 1 ligand type 18 ligands Cluster 3. 1 ligand type 1 ligand
Representative protein: 1dceB

Structures

PDB		Schematic diagram
1dceB
3pz2B
4gtvB
4ehmB
3c72B
		more ...

Cluster 1 contains 19 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
_Zn		1. Metal: _ZN × 21 PDB codes: 1dce(B), 1ltx(B), 3c72(B), 3dss(B), 3dst(B), 3dsu(B), 3dsv(B), 3dsw(B), 3dsx(B), 3hxb(B), 3hxc(B), 3hxd(B), 3hxe(B), 3hxf(B), 3pz1(B), 3pz2(B), 3pz3(B), 4ehm(B), 4gts(B), 4gtt(B), 4gtv(B).
		2. Ligand: DMS × 4 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 3pz1(B),
		3. Ligand: GER × 3 Geran-8-Yl geran PDB codes: 3dsv(B), 3dsw(B), 3dsx(B).
		4. Ligand: 3PZ × 2 (3r)-3-Benzyl-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5- Tetrahydro-1h- 1,4-Benzodiazepine-7-Carbonitrile PDB codes: 3pz1(B), 3pz2(B).
		5. Ligand: GRG × 2 Geranylgeranyl diphosphate PDB codes: 3dst(B), 3pz2(B).
		6. Ligand: 7TP × 1 5-{(3r)-3-(4-Hydroxybenzyl)-4-[(4-Methoxyphenyl) sulfonyl]-1-[(1-Methyl-1h-Imidazol-5-Yl)methyl]- 2,3,4, 5-Tetrahydro-1h-1,4-Benzodiazepin-7-Yl}furan-2- Carbaldehyde PDB code: 4gts(B).
		7. Ligand: 7TQ × 1 4-({(3r)-7-Cyano-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5- Tetrahydro-1h- 1,4-Benzodiazepin-3-Yl}methyl)phenyl benzylcarbamate PDB code: 4gtt(B).
		8. Ligand: 7TR × 1 4-({(3r)-7-Cyano-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5- Tetrahydro-1h- 1,4-Benzodiazepin-3-Yl}methyl)phenyl diethylcarbamate PDB code: 4gtv(B).
		9. Ligand: ALA-ALA-ALA-ALA × 1 PDB code: 1ltx(B).
		10. Ligand: BD5 × 1 N-[(Benzyloxy)carbonyl]-D-Tyrosyl-L-Phenylalanyl-L- Tyrosine PDB code: 3hxb(B).
		11. Ligand: BD6 × 1 N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L- Phenylalanyl-N-Hydroxy-L-Tryptophanamide PDB code: 3hxc(B).
		12. Ligand: BD7 × 1 N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L- Phenylalanyl-N-Hydroxy-L-Tyrosinamide PDB code: 3hxd(B).
		13. Ligand: BD8 × 1 N-Undecanoyl-L-Histidyl-L-Phenylalanyl-N-Methyl-N-(2- Pyridin-2-Ylethyl)-L-Tyrosinamide PDB code: 3hxe(B).
		14. Ligand: BD9 × 1 N-Undecanoyl-L-Histidyl-L-Histidyl-N-Methyl-N-(2- Pyridin-2-Ylethyl)-L-Tyrosinamide PDB code: 3hxf(B).
		15. Ligand: CX1 × 1 N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L- Phenylalanyl-L-Tyrosine PDB code: 3c72(B).
		16. Ligand: FAR × 1 Farnesyl PDB code: 1ltx(B).
		17. Ligand: FPP × 1 Farnesyl diphosphate PDB code: 3dsu(B).
		18. Ligand: PJA × 1 4-Formyl-3-Hydroxy-8-Methoxy-1,9-Dimethyl-11-Oxo-11h- Dibenzo[b,E][1,4]dioxepine-6-Carboxylic acid PDB code: 4ehm(B).
		19. Ligand: PZ3 × 1 4-({(3r)-7-(5-Formylfuran-2-Yl)-4-[(4-Methoxyphenyl) sulfonyl]-1-[(1-Methyl-1h-Imidazol-5- Yl)methyl]-2,3,4, 5-Tetrahydro-1h-1,4-Benzodiazepin-3-Yl}methyl)phenyl benzylcarbamate PDB code: 3pz3(B).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Ca		1. Metal: _CA × 18 PDB codes: 3c72(B), 3dss(B), 3dst(B), 3dsu(B), 3dsv(B), 3dsw(B), 3dsx(B), 3hxc(B), 3hxd(B), 3hxe(B), 3hxf(B), 3pz1(B), 3pz2(B), 3pz3(B), 4ehm(B), 4gts(B), 4gtt(B), 4gtv(B).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Ca		1. Metal: _CA × 1 PDB code: 3dss(B).