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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q08602

Ligand clusters for Q08602: Geranylgeranyl transferase type-2 subunit alpha from Rattus norvegicus

1 ligand cluster
Cluster 1.
17 ligand types
22 ligands
Representative protein: 1dceA  
JSmol
 

Structures

PDB   Schematic diagram
1dceA    
1ltxA    
3pz2A    
3pz1A    
3dstA    
 more ...

 

 Cluster 1 contains 17 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 4
PDB codes: 1dce(A), 3dsv(A), 3dsw(A), 3dsx(A).


 
2. Ligand: DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code: 3pz1(A).


 
3. Ligand: 3PZ × 2
(3r)-3-Benzyl-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5-
Tetrahydro-1h- 1,4-Benzodiazepine-7-Carbonitrile
PDB codes: 3pz1(A), 3pz2(A).


 
4. Ligand: GRG × 2
Geranylgeranyl diphosphate
PDB codes: 3dst(A), 3pz2(A).


 
5. Ligand: 7TP × 1
5-{(3r)-3-(4-Hydroxybenzyl)-4-[(4-Methoxyphenyl) sulfonyl]-1-[(1-Methyl-1h-Imidazol-5-Yl)methyl]-
2,3,4, 5-Tetrahydro-1h-1,4-Benzodiazepin-7-Yl}furan-2- Carbaldehyde
PDB code: 4gts(A).


 
6. Ligand: 7TQ × 1
4-({(3r)-7-Cyano-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5-
Tetrahydro-1h- 1,4-Benzodiazepin-3-Yl}methyl)phenyl benzylcarbamate
PDB code: 4gtt(A).


 
7. Ligand: 7TR × 1
4-({(3r)-7-Cyano-4-[(4-Methoxyphenyl)sulfonyl]-1-[(1- Methyl-1h-Imidazol-5-Yl)methyl]-2,3,4,5-
Tetrahydro-1h- 1,4-Benzodiazepin-3-Yl}methyl)phenyl diethylcarbamate
PDB code: 4gtv(A).


 
8. Ligand: ALA-ALA-ALA-ALA × 1
PDB code: 1ltx(A).


 
9. Ligand: BD5 × 1
N-[(Benzyloxy)carbonyl]-D-Tyrosyl-L-Phenylalanyl-L- Tyrosine
PDB code: 3hxb(A).


 
10. Ligand: BD8 × 1
N-Undecanoyl-L-Histidyl-L-Phenylalanyl-N-Methyl-N-(2- Pyridin-2-Ylethyl)-L-Tyrosinamide
PDB code: 3hxe(A).


 
11. Ligand: BD9 × 1
N-Undecanoyl-L-Histidyl-L-Histidyl-N-Methyl-N-(2- Pyridin-2-Ylethyl)-L-Tyrosinamide
PDB code: 3hxf(A).


 
12. Ligand: CX1 × 1
N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L- Phenylalanyl-L-Tyrosine
PDB code: 3c72(A).


 
13. Ligand: FAR × 1
Farnesyl
PDB code: 1ltx(A).


 
14. Ligand: FPP × 1
Farnesyl diphosphate
PDB code: 3dsu(A).


 
15. Ligand: GER × 1
Geran-8-Yl geran
PDB code: 3dsx(A).


 
16. Ligand: PJA × 1
4-Formyl-3-Hydroxy-8-Methoxy-1,9-Dimethyl-11-Oxo-11h- Dibenzo[b,E][1,4]dioxepine-6-Carboxylic acid
PDB code: 4ehm(A).


 
17. Ligand: PZ3 × 1
4-({(3r)-7-(5-Formylfuran-2-Yl)-4-[(4-Methoxyphenyl) sulfonyl]-1-[(1-Methyl-1h-Imidazol-5-
Yl)methyl]-2,3,4, 5-Tetrahydro-1h-1,4-Benzodiazepin-3-Yl}methyl)phenyl benzylcarbamate
PDB code: 3pz3(A).

 

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