Ligand clusters for UniProt code Q07412

Ligand clusters for Q07412: Triosephosphate isomerase from Plasmodium falciparum

		Top 6 (of 26) ligand clusters Cluster 1. 12 ligand types 31 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 3 ligands Cluster 5. 3 ligand types 10 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2vfdA

Structures

PDB		Schematic diagram
2vfdA
3pwaA
1o5xA
1m7oA
5brbA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: G3H × 1 Glyceraldehyde-3-Phosphate PDB code: 1m7p(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 2vfe(A).
		3. Ligand: 3PG × 1 3-Phosphoglyceric acid PDB code: 1m7o(A).
		4. Ligand: PGA × 1 2-Phosphoglycolic acid PDB code: 1lyx(A).
		5. Ligand: G2H × 1 2-Hydroxy-1-(Hydroxymethyl)ethyl dihydrogen phosphate PDB code: 1woa(A).
		6. Ligand: 3PY × 1 3-Hydroxypyruvic acid PDB code: 1o5x(A).
		7. Ligand: PO3 × 1 Phosphite ion PDB code: 1o5x(A).
		8. Ligand: EDO × 10 1,2-Ethanediol PDB codes: 3psv(A), 3psw(A), 3pwa(A), 3py2(A), 4yxg(A), 4z0s(A), 4zz9(A), 5bmw(A), 5bmx(A).
		9. Ligand: SO4 × 8 Sulfate ion PDB codes: 1wob(A), 2vfd(A), 3psv(A), 3psw(A), 3py2(A), 4ywi(A), 4z0j(A), 5bmx(A).
		10. Ligand: PGA × 3 2-Phosphoglycolic acid PDB codes: 3pvf(A), 5gv4(A), 5gzp(A).
		11. Ligand: 3PG × 2 3-Phosphoglyceric acid PDB codes: 2vfh(A), 2vfi(A).
		12. Ligand: ACT × 1 Acetate ion PDB code: 3pwa(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: 3PG × 3 3-Phosphoglyceric acid PDB codes: 2vfe(A), 2vfg(A), 2vfi(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4z0j(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4z0j(A).
		2. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 5bmw(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: 3PG × 3 3-Phosphoglyceric acid PDB codes: 2vfe(A), 2vfg(A), 2vfi(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
_Na		1. Metal: _NA × 5 PDB codes: 4zz9(A), 5bmw(A), 5bmx(A), 5bnk(A), 5brb(A).
		2. Ligand: EDO × 4 1,2-Ethanediol PDB codes: 5bmw(A), 5bnk(A), 5gzp(A).
_Ca		3. Metal: _CA × 1 PDB code: 5bmw(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 3psw(A).