Ligand clusters for UniProt code P90498

Ligand clusters for P90498: Capsid protein VP1 from JC polyomavirus

		Top 6 (of 11) ligand clusters Cluster 1. 3 ligand types 3 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 15 ligands Cluster 5. 2 ligand types 7 ligands Cluster 6. 1 ligand type 6 ligands
Representative protein: 4x0yA

Structures

PDB		Schematic diagram
4x0yA
4x11B
4x13A
4x12A
4x10A
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: GAL-NAG-GAL-SIA × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4x13(A).
		2. Ligand: SIA × 1 N-Acetyl-Alpha-Neuraminic acid PDB code: 4x11(B).
		3. Ligand: SIA-SIA × 1 SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4x12(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4x0z(A).
		2. Ligand: GAL-NGA-GAL-SIA × 1 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4x0z(A).
		3. Ligand: SIA-SIA × 1 SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4x12(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: SIA × 1 N-Acetyl-Alpha-Neuraminic acid PDB code: 4x11(B).
		2. Ligand: SIA-SIA × 1 SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4x12(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4x0z(A), 4x10(A).
		2. Ligand: EDO × 13 1,2-Ethanediol PDB codes: 4x0y(A), 4x0z(A), 4x10(A), 4x11(B), 4x12(A), 4x13(A),

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 4x0z(A), 4x10(A), 4x13(A).
		2. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4x0y(A), 4x11(B), 4x12(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 4x0y(A), 4x0z(A), 4x10(A), 4x11(B), 4x12(A), 4x13(A).