Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P63104
Ligand clusters for P63104: 14-3-3 protein zeta/delta from Homo sapiens
Top 6 (of 14) ligand clusters
Cluster 1.
51 ligand types
85 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
2 ligand types
6 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
2 ligand types
10 ligands
Representative protein: 4zdrA
Structures
PDB
Schematic diagram
4zdr
A
6zfd
A
6zfg
A
5xy9
A
5wxn
A
more ...
Cluster 1 contains 51 ligand types (of which only 20 are listed. Click
for all)
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
BEZ × 13
benzoic acid
Benzoic acid
PDB codes:
2o02
(A),
5ewz
(A),
5exa
(A),
5jit
(A),
5jiv
(A),
5jm4
(A),
5m35
(A),
5m36
(A),
5m37
(A),
6fn9
(A),
6fna
(A),
6fnb
(A),
6fnc
(A).
2. Ligand:
GOL × 5
glycerin
Glycerol
PDB codes:
5xy9
(A),
6zfg
(A),
7d8p
(A),
7d9v
(A),
3. Ligand:
PPI × 2
propanoic acid
Propanoic acid
PDB codes:
3cu8
(A),
3nkx
(A).
4. Ligand:
SAL × 1
salicylic acid
2-Hydroxybenzoic acid
PDB code:
6ymo
(A).
_Mg
5. Metal:
_MG × 1
PDB code:
3cu8
(A).
__K
6. Metal:
__K × 1
PDB code:
4ihl
(A).
7. Ligand:
9SZ × 4
C42 h32 o8 p2
PDB codes:
5m36
(A),
5m37
(A),
8. Ligand:
ARG-LYS-LEU-SEP-LEU-GLN-GLU-ARG × 4
SEP
=Phosphoserine.
PDB codes:
6eww
(A),
_Cl
9. Metal:
_CL × 4
PDB codes:
6fna
(A),
6fnb
(A),
6fnc
(A).
10. Ligand:
PE4 × 3
2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}- Ethoxy)-Ethoxy]-Ethoxy}-Ethanol
PDB codes:
4bg6
(A),
5xy9
(A).
11. Ligand:
19O × 2
Natrium-(5,7 ,9 ,11 ,16 ,18 ,20 ,22 )-5,7,9,11,16,18, 20,22-Octahydro-5,22:7,20:9,18:11,16-
Tetramethanononacen-8,19-Bisphosphate
PDB codes:
5jiv
(A),
12. Ligand:
ARG-LEU-TYR-HIS-SEP-LEU-PRO-ALA × 2
SEP
=Phosphoserine.
PDB codes:
1qja
(A),
13. Ligand:
ARG-SER-THR-SEP-THR-PRO-ASN-VAL-HIS × 2
SEP
=Phosphoserine.
PDB codes:
3cu8
(A),
3nkx
(A).
14. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
5ulo
(A),
15. Ligand:
LEU-TYR-ARG-SER-PRO-SEP-MET-PRO-GLU-ASN × 2
SEP
=Phosphoserine.
PDB codes:
5jit
(A),
5m35
(A).
16. Ligand:
TYR-ARG-SER-PRO-SEP-MET-PRO-GLU-ASN × 2
SEP
=Phosphoserine.
PDB codes:
5jiv
(A),
5m36
(A).
17. Ligand:
1F5 × 1
(1r,3as,4r,5r,6r,9ar,10e)-6-({(1s,2r,4s,5r,6r,8s,9s)-5- Hydroxy-2-(Methoxymethyl)-9-Methyl-9-[(2s)-
Oxiran-2- Yl]-3,7,10,11-Tetraoxatricyclo[6.2.1.0~1,6~]undec-4- Yl}oxy)-1-(Methoxymethyl)-4,9a-
Dimethyl-7-(Propan-2- Yl)-1,2,3,3a,4,5,6,8,9,9a-Decahydrodicyclopenta[a, D][8]annulene-1,5-Diol
PDB code:
4ihl
(A).
18. Ligand:
3RD × 1
4-[(E)-{4-Formyl-5-Hydroxy-6-Methyl-3-[(Phosphonooxy) methyl]pyridin-2-Yl}diazenyl]benzoic acid
PDB code:
3rdh
(A).
19. Ligand:
5SO × 1
Fusicoccin a-Thf derivative
PDB code:
5exa
(A).
20. Ligand:
ALA-ARG-ALY-SEP-THR-GLY-GLY-LYS × 1
ALY
=N(6)-Acetyllysine,
SEP
=Phosphoserine.
PDB code:
2c1j
(A).
+ more. Press
for full list
Cluster 2 contains 3 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ARG-ARG-PRO-GLU-SEP-ALA-PRO-ALA × 1
SEP
=Phosphoserine.
PDB code:
6f08
(A).
2. Ligand:
ARG-LYS-LEU-SEP-LEU-GLN-GLU × 1
SEP
=Phosphoserine.
PDB code:
6eww
(A).
3. Ligand:
ARG-LYS-LEU-SEP-LEU-GLN-GLU-ARG × 1
SEP
=Phosphoserine.
PDB code:
6eww
(C).
Cluster 3 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 5
glycerin
Glycerol
PDB codes:
5jit
(A),
5m35
(A),
6fn9
(A),
6fna
(A),
6fnc
(A).
2. Ligand:
P6G × 1
Hexaethylene glycol
PDB code:
4n7g
(A).
Cluster 4 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6zfd
(A).
2. Ligand:
P6G × 1
Hexaethylene glycol
PDB code:
4n7g
(A).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GLC-FRU × 1
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
5d2d
(A).
Cluster 6 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 9
glycerin
Glycerol
PDB codes:
5jit
(A),
5jiv
(A),
5m35
(A),
5m36
(A),
6fn9
(A),
6fna
(A),
6fnb
(A),
6fnc
(A),
6zfd
(A).
2. Ligand:
1PE × 1
Pentaethylene glycol
PDB code:
6f08
(A).