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EBI
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PDBsum
Ligand clusters for UniProt code P63043
Ligand clusters for P63043: Stathmin-4 from Rattus norvegicus
5 ligand clusters
Cluster 1.
3 ligand types
7 ligands
Cluster 2.
3 ligand types
18 ligands
Cluster 3.
1 ligand type
8 ligands
Cluster 4.
1 ligand type
6 ligands
Cluster 5.
1 ligand type
6 ligands
Representative protein: 3rycE
Structures
PDB
Schematic diagram
3ryc
E
3ryf
E
5jh7
E
5bmv
E
5z4p
E
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5z4p
(E).
2. Ligand:
IMD × 5
Imidazole
PDB codes:
4o2b
(E),
5gon
(E),
5xaf
(E),
5xag
(E),
5z4p
(E).
3. Ligand:
MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code:
4i50
(E).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 13
glycerin
Glycerol
PDB codes:
4o2b
(E),
4o4j
(E),
4tv8
(E),
4zhq
(E),
4zol
(E),
5bmv
(E),
5gon
(E),
5ov7
(E),
5xaf
(E),
5xag
(E),
5z4p
(E),
6s9e
(E),
6ses
(E).
2. Ligand:
DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code:
6fjf
(E).
_Ca
3. Metal:
_CA × 4
PDB codes:
4o2a
(E),
5jh7
(E),
5lyj
(E),
6knz
(E).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 8
glycerin
Glycerol
PDB codes:
4i4t
(E),
4tv9
(E),
4zi7
(E),
5jh7
(E),
5jvd
(E),
6tis
(E),
6tiy
(E),
6tiz
(E).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 6
glycerin
Glycerol
PDB codes:
4o2b
(E),
5gon
(E),
5osk
(E),
5xaf
(E),
5xag
(E),
5z4p
(E).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 6
Sulfate ion
PDB codes:
3ryc
(E),
3ryf
(E),
3ryi
(E),
6h9b
(E),
6tiy
(E),
6tiz
(E).