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EBI
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Structure Databases
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Ligand clusters for UniProt code P61925
Ligand clusters for P61925: cAMP-dependent protein kinase inhibitor alpha from Homo sapiens
4 ligand clusters
Cluster 1.
21 ligand types
44 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
4 ligands
Representative protein: 1cmkI
Structures
PDB
Schematic diagram
1cmk
I
4iai
S
4wb7
I
4ib0
S
4wb8
I
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Cluster 1 contains 21 ligand types (of which only 20 are listed. Click
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Ligand
Description
_Mg
1. Metal:
_MG × 2
PDB codes:
4iad
(S),
4iaf
(S).
2. Ligand:
IPH × 1
phenol
Phenol
PDB code:
3nx8
(B).
__K
3. Metal:
__K × 1
PDB code:
4ib1
(S).
4. Ligand:
M77 × 1
5-(1,4-Diazepan-1-Sulfonyl)isoquinoline
PDB code:
2gni
(I).
5. Ligand:
R69 × 2
N-[4-({4-[5-(Dimethylamino)-2- Hydroxybenzoyl]benzoyl}amino)azepan-3- Yl]isonicotinamide
PDB codes:
1xh4
(B),
1xh9
(B).
6. Ligand:
R94 × 1
N-(4-{[4-(2-Hydroxy-5-Piperidin-1-Ylbenzoyl) benzoyl]amino}azepan-3-Yl)isonicotinamide
PDB code:
1xh6
(B).
7. Ligand:
R68 × 2
N-{4-[(4-{3-[(2r)-3,3-Dimethylpiperidin-2-Yl]-2- Fluoro-6-Hydroxybenzoyl}benzoyl)amino]azepan-3-
Yl}isonicotinamide
PDB codes:
1xh5
(B),
1xha
(B).
8. Ligand:
R55 × 1
N-[4-({4-[5-(4,4-Dimethylpiperidin-1-Yl)-2- Hydroxybenzoyl]benzoyl}amino)azepan-3-
Yl]isonicotinamide
PDB code:
1xh8
(B).
9. Ligand:
R96 × 1
N-[4-({4-[5-(3,3-Dimethylpiperidin-1-Yl)-2- Hydroxybenzoyl]benzoyl}amino)azepan-3-
Yl]isonicotinamide
PDB code:
1xh7
(B).
10. Ligand:
GVO × 1
(2s)-2-(4-Chlorophenyl)-2-[4-(1h-Pyrazol-4- Yl)phenyl]ethanamine
PDB code:
2uw6
(I).
11. Ligand:
L20 × 1
(2s)-1-(1h-Indol-3-Yl)-3-{[5-(3-Methyl-1h- Indazol-5-Yl)pyridin-3-Yl]oxy}propan-2-Amine
PDB code:
2jdv
(I).
12. Ligand:
ADP × 11
Adenosine-5'-Diphosphate
PDB codes:
4iad
(S),
4iaf
(S),
4iai
(S),
4iak
(S),
4iay
(S),
4iaz
(S),
4ib0
(S),
4ib1
(S),
4ib3
(S),
4o21
(S),
6e21
(B).
13. Ligand:
ATP × 8
Adenosine-5'-Triphosphate
PDB codes:
3x2u
(S),
3x2v
(S),
3x2w
(S),
4wb5
(I),
4wb6
(I),
4wb7
(I),
4wb8
(I).
_Sr
14. Metal:
_SR × 3
PDB codes:
4iak
(S),
4iay
(S),
6e21
(B).
15. Ligand:
BUD × 2
(2s,3s)-Butane-2,3-Diol
PDB codes:
3ovv
(B),
3poo
(B).
16. Ligand:
6TV × 1
~{N}-[2-(Propylamino)ethyl]isoquinoline-5-Sulfonamide
PDB code:
5lcq
(B).
17. Ligand:
ACP × 1
Phosphomethylphosphonic acid adenylate ester
PDB code:
4iac
(S).
18. Ligand:
E3Z × 1
~{N}-[3-[(5-Chloranyl-2-Phenylazanyl-Pyrimidin-4-Yl) amino]phenyl]prop-2-Enamide
PDB code:
6frx
(B).
_Ba
19. Metal:
_BA × 1
PDB code:
4iaz
(S).
_Ca
20. Metal:
_CA × 1
PDB code:
4iai
(S).
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Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
TPO × 1
Phosphothreonine
PDB code:
4uj9
(B).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
BU3 × 1
(R,R)-2,3-Butanediol
PDB code:
1xh5
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2vo0
(I).
Cluster 4 contains 2 ligand types
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Ligand
Description
Iod
1. Metal:
IOD × 2
PDB codes:
1cmk
(I),
2. Ligand:
MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
4ujb
(B),
5bx7
(B).