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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P61615

Ligand clusters for P61615: Isopentenyl-diphosphate delta-isomerase from Saccharolobus shibatae

1 ligand cluster
Cluster 1.
8 ligand types
21 ligands
Representative protein: 2zrwA  
JSmol
 

Structures

PDB   Schematic diagram
2zrwA    
3b05A    
2zryA    
2zrxA    
3b06A    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 4
PDB codes: 2zrw(A), 2zrx(A), 2zry(A), 2zrz(A).


 
2. Ligand: FMN × 3
flavin mononucleotide
Flavin mononucleotide
PDB codes: 2zru(A), 2zrw(A), 2zrx(A).


 
3. Ligand: FNR × 6
1-Deoxy-1-(7,8-Dimethyl-2,4-Dioxo-3,4-Dihydro-2h- Benzo[g]pteridin-1-Id-10(5h)-Yl)-5-O-Phosphonato-
D- Ribitol
PDB codes: 2zrv(A), 2zry(A), 2zrz(A), 3b05(A), 3b06(A), 3vkj(A).


 
4. Ligand: DMA × 3
Dimethylallyl diphosphate
PDB codes: 2zrx(A), 2zrz(A), 3b06(A).


 
5. Ligand: IPE × 2
3-Methylbut-3-Enyl trihydrogen diphosphate
PDB codes: 2zry(A), 3b05(A).


 
6. Ligand: IPR × 1
Isopentyl pyrophosphate
PDB code: 2zrw(A).


 
7. Ligand: OOP × 1
1-Deoxy-1-[(4ar)-4a-[(2r)-1-Hydroxy-5-{[(S)- Hydroxy(phosphonooxy)phosphoryl]oxy}-3-
Methylidenepentan-2-Yl]-7,8-Dimethyl-2,4-Dioxo-3,4,4a, 5-Tetrahydrobenzo[g]pteridin-10(2h)-Yl]-5-
O-Phosphono- D-Ribitol
PDB code: 3b04(A).


 
8. Ligand: VNR × 1
1-Deoxy-1-[(4ar)-4a-[(2z)-2-(2-{[(S)- Hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)but-2-En-1- Yl]-
7,8-Dimethyl-2,4-Dioxo-3,4,4a,5- Tetrahydrobenzo[g]pteridin-10(2h)-Yl]-5-O-Phosphono-D- Ribitol
PDB code: 3b03(A).

 

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