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EBI
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PDBsum
Ligand clusters for UniProt code P52298
Ligand clusters for P52298: Nuclear cap-binding protein subunit 2 from Homo sapiens
Top 6 (of 8) ligand clusters
Cluster 1.
5 ligand types
8 ligands
Cluster 2.
1 ligand type
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 5oobB
Structures
PDB
Schematic diagram
5oob
B
5oo6
B
6d0y
A
1h2u
X
1h2t
Z
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1n52
(B),
2. Ligand:
GDP-7MG × 2
GDP
=Guanosine-5'-Diphosphate,
7MG
=7n-Methyl-8-Hydroguanosine-5'-Monophosphate.
PDB codes:
1h2t
(Z),
1h2u
(X).
3. Ligand:
MGT × 2
7n-Methyl-8-Hydroguanosine-5'-Triphosphate
PDB codes:
5oo6
(B),
5oob
(B).
4. Ligand:
GTA × 1
P1-7-Methylguanosine-P3-Adenosine-5',5'-Triphosphate
PDB code:
6d0y
(A).
5. Ligand:
GTG × 1
7-Methyl-Guanosine-5'-Triphosphate-5'-Guanosine
PDB code:
1n52
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
1n52
(B),
1n54
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1n52
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1n52
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1n54
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1n54
(B).