Ligand clusters for UniProt code P42371

Ligand clusters for P42371: Formamidopyrimidine-DNA glycosylase from Lactococcus lactis subsp. cremoris

		Top 6 (of 7) ligand clusters Cluster 1. 6 ligand types 7 ligands Cluster 2. 2 ligand types 17 ligands Cluster 3. 1 ligand type 2 ligands Cluster 4. 1 ligand type 21 ligands Cluster 5. 1 ligand type 4 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 4pd2A

Structures

PDB		Schematic diagram
4pd2A
6rokA
1xc8A
6rnoA
1tdzA
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: 5JL × 2 2,8-Dithioxo-1,2,3,7,8,9-Hexahydro-6h-Purin-6-One PDB codes: 6rok(A), 6rp0(A).
		2. Ligand: 2ON × 1 2-Sulfanyl-1,9-Dihydro-6h-Purin-6-One PDB code: 6ro2(A).
		3. Ligand: KB5 × 1 6-Azanyl-9~{h}-Purine-8-Thiol PDB code: 6rnm(A).
		4. Ligand: KBN × 1 2-(Trifluoromethyl)-9~{h}-Purine-6-Thiol PDB code: 6rnr(A).
		5. Ligand: KBQ × 1 2-Sulfanylidene-1,7-Dihydropyrrolo[2,3-D]pyrimidin-4- One PDB code: 6rno(A).
		6. Ligand: KD8 × 1 6,7-Dimethyl-2-Sulfanylidene-1~{h}-Pteridin-4-One PDB code: 6rp7(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 15 PDB codes: 1kfv(A), 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A), 1tdz(A), 1xc8(A), 2xzf(A), 2xzu(A), 3c58(A), 4pcz(A), 4pd2(A), 6h0s(A), 6rnm(A), 6rok(A).
		2. Ligand: 2ON × 2 2-Sulfanyl-1,9-Dihydro-6h-Purin-6-One PDB codes: 4pdi(A), 6ro2(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: 2ON × 2 2-Sulfanyl-1,9-Dihydro-6h-Purin-6-One PDB codes: 4pdg(A), 6ro2(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 21 glycerin Glycerol PDB codes: 1kfv(A), 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A), 1tdz(A), 1xc8(A), 2xzf(A), 2xzu(A), 3c58(A), 4pcz(A), 4pdg(A), 6h0s(A), 6rnm(A), 6rno(A), 6rnr(A), 6ro2(A), 6rok(A), 6rp0(A), 6rp7(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1nnj(A), 1pji(A), 1pjj(A), 1pm5(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1pji(A), 1pjj(A), 1pm5(A), 6rnm(A).