Ligand clusters for UniProt code P39075

Ligand clusters for P39075: Multidrug-efflux transporter 1 regulator from Bacillus subtilis (strain 168)

		Top 6 (of 16) ligand clusters Cluster 1. 12 ligand types 22 ligands Cluster 2. 5 ligand types 8 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 3d6yA

Structures

PDB		Schematic diagram
3d6yA
7ckqG
3d6zA
3q3dA
1exjA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: ACH × 1 acetylcholine Acetylcholine PDB code: 3q5s(A).
		2. Ligand: BER × 1 berberine Berberine PDB code: 3d6y(A).
		3. Ligand: GOL × 1 glycerin Glycerol PDB code: 3d70(A).
		4. Ligand: KAN × 1 kanamycin Kanamycin a PDB code: 3q5r(A).
		5. Ligand: TAC × 1 tetracycline Tetracycline PDB code: 3q5p(A).
		6. Ligand: IMD × 10 Imidazole PDB codes: 1r8e(A), 3d70(A), 3d71(A),
		7. Ligand: P4P × 2 Tetraphenylphosphonium PDB codes: 2bow(A), 7ckq(G).
		8. Ligand: 118 × 1 Tetraphenylantimonium ion PDB code: 1exi(A).
		9. Ligand: FLC × 1 Citrate anion PDB code: 3d71(A).
		10. Ligand: M4A × 1 2-Methylquinolin-4-Amine PDB code: 3q1m(A).
		11. Ligand: PUY × 1 Puromycin PDB code: 3q3d(A).
		12. Ligand: RHQ × 1 Rhodamine 6g PDB code: 3d6z(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3d6y(A).
		2. Ligand: IMD × 3 Imidazole PDB codes: 1r8e(A), 3d70(A), 3d71(A).
		3. Ligand: P4P × 2 Tetraphenylphosphonium PDB codes: 1exj(A), 1r8e(A).
		4. Ligand: 118 × 1 Tetraphenylantimonium ion PDB code: 1exi(A).
		5. Ligand: PGO × 1 S-1,2-Propanediol PDB code: 3d71(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 1r8e(A), 3d70(A).
		2. Ligand: PGO × 1 S-1,2-Propanediol PDB code: 3d71(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3d6y(A), 3d6z(A).
		2. Ligand: IMD × 2 Imidazole PDB codes: 1r8e(A), 3d70(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3d70(A), 3q5p(A).
		2. Ligand: PGO × 1 S-1,2-Propanediol PDB code: 3d71(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1r8e(A).