Ligand clusters for UniProt code P37028

Ligand clusters for P37028: Vitamin B12-binding protein from Escherichia coli (strain K12)

		Top 6 (of 11) ligand clusters Cluster 1. 6 ligand types 13 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 2 ligand types 5 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 1n2zA

Structures

PDB		Schematic diagram
1n2zA
5m3bA
5m34A
5m29A
5m2qA
		more ...

Cluster 1 contains 6 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 5m29(A), 5m34(A), 5m3b(A), 5ovw(A).
		2. Ligand: CNC × 2 cyanocobalamin Co-Cyanocobalamin PDB codes: 1n2z(A), 1n4a(A).
		3. Ligand: CBY-CYN × 3 CBY=Cob(ii)inamide, CYN=Cyanide ion. PDB codes: 5m29(A), 5m2q(A), 5m34(A).
_Cd		4. Metal: _CD × 2 PDB codes: 1n2z(A),
		5. Ligand: CYN-CBY-CYN × 1 CYN=Cyanide ion, CBY=Cob(ii)inamide. PDB code: 5m3b(A).
_Cl		6. Metal: _CL × 1 PDB code: 1n2z(A).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 1n2z(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 5m29(A), 5m2q(A),
_Cd		2. Metal: _CD × 1 PDB code: 1n2z(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5m2q(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Cd		1. Metal: _CD × 1 PDB code: 1n2z(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Cd		1. Metal: _CD × 2 PDB codes: 1n2z(A),