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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P33371
Ligand clusters for P33371: tRNA-dihydrouridine(16) synthase from Escherichia coli (strain K12)
Top 6 (of 7) ligand clusters
Cluster 1.
1 ligand type
5 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4bf9A
Structures
PDB
Schematic diagram
4bf9
A
4bfa
A
4yco
A
4ycp
A
3w9z
A
Cluster 1 contains 1 ligand type
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Ligand
Description
1. Ligand:
FMN × 5
flavin mononucleotide
Flavin mononucleotide
PDB codes:
3w9z
(A),
4bf9
(A),
4bfa
(A),
4yco
(A),
4ycp
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
FMN × 1
flavin mononucleotide
Flavin mononucleotide
PDB code:
4bfa
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
NO3 × 1
Nitrate ion
PDB code:
4bfa
(A).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4ycp
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4ycp
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4bfa
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4bfa
(A).