Ligand clusters for UniProt code P29563

Ligand clusters for P29563: Archaerhodopsin-2 from Halobacterium sp. (strain aus-2)

		Top 6 (of 10) ligand clusters Cluster 1. 7 ligand types 10 ligands Cluster 2. 2 ligand types 6 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 2z55A

Structures

PDB		Schematic diagram
2z55A
1vgoA
2ei4A
3wqjA

Cluster 1 contains 7 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 2ei4(A).
		2. Ligand: SQL × 1 squalene (6e,10e,14e,18e)-2,6,10,15,19,23-Hexamethyltetracosa-2, 6,10,14,18,22-Hexaene PDB code: 3wqj(A).
		3. Ligand: L2P × 3 2,3-Di-Phytanyl-Glycerol PDB codes: 2ei4(A), 2z55(A), 3wqj(A).
		4. Ligand: L4P × 2 3-[Glycerolylphosphonyl]-[1,2-Di-Phytanyl]glycerol PDB codes: 3wqj(A),
		5. Ligand: BNG × 1 Nonyl beta-D-Glucopyranoside PDB code: 1vgo(A).
		6. Ligand: GLC-MAN-GAL × 1 GLC=Alpha-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose. PDB code: 2z55(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 3wqj(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BNG × 4 Nonyl beta-D-Glucopyranoside PDB codes: 1vgo(A),
		2. Ligand: 22B × 2 Bacterioruberin PDB codes: 2ei4(A), 2z55(A).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GLC-MAN-GAL × 1 GLC=Alpha-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose. PDB code: 2z55(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: 22B × 1 Bacterioruberin PDB code: 3wqj(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BNG × 1 Nonyl beta-D-Glucopyranoside PDB code: 1vgo(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BNG × 2 Nonyl beta-D-Glucopyranoside PDB codes: 1vgo(A),