Ligand clusters for UniProt code P25006

Ligand clusters for P25006: Copper-containing nitrite reductase from Achromobacter cycloclastes

		Top 6 (of 25) ligand clusters Cluster 1. 4 ligand types 23 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 3 ligand types 47 ligands Cluster 4. 2 ligand types 10 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 3 ligand types 13 ligands
Representative protein: 5akrA

Structures

PDB		Schematic diagram
5akrA
6knfA
5ofcA
6kngA
2bwdA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 1rzq(A).
		2. Ligand: ACT × 12 Acetate ion PDB codes: 2bw4(A), 2bw5(A), 2bwd(A), 2bwi(A), 5akr(A), 5i6l(A), 5of5(A), 5off(A), 5ofg(A), 5ofh(A), 5og2(A), 5ogg(A).
		3. Ligand: MLI × 6 Malonate ion PDB codes: 6gt0(A), 6gt2(A), 6gti(A), 6gtk(A), 6gtl(A), 6gtn(A).
		4. Ligand: SO4 × 4 Sulfate ion PDB codes: 5n8f(A), 5n8g(A), 5n8h(A), 6gsq(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 2bw5(A).
		2. Ligand: ACT-ACT × 1 ACT=Acetate ion. PDB code: 2bwi(A).
		3. Ligand: MLI × 1 Malonate ion PDB code: 5akr(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
_Cu		1. Metal: _CU × 45 PDB codes: 1kcb(A), 1nia(A), 1nib(A), 1nic(A), 1nid(A), 1nie(A), 1nif(A), 1rzp(A), 1rzq(A), 2avf(A), 2bw4(A), 2bw5(A), 2bwd(A), 2bwi(A), 2nrd(A), 5akr(A), 5i6k(A), 5i6l(A), 5i6p(A), 5n8f(A), 5n8g(A), 5n8h(A), 5n8i(A), 5of5(A), 5ofc(A), 5off(A), 5ofg(A), 5ofh(A), 5og2(A), 5ogg(A), 6gb8(A), 6gbb(A), 6gby(A), 6gcg(A), 6gsq(A), 6gt0(A), 6gt2(A), 6gti(A), 6gtj(A), 6gtk(A), 6gtl(A), 6gtn(A), 6knf(A), 6kng(A), 6qwg(A).
		2. Ligand: HOA-NO2 × 1 NO2=Nitrite ion, HOA=Hydroxyamine. PDB code: 2bwd(A).
		3. Ligand: MLI × 1 Malonate ion PDB code: 6gt2(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1nic(A).
		2. Ligand: MLI × 9 Malonate ion PDB codes: 2bw4(A), 2bw5(A), 2bwd(A), 2bwi(A), 5akr(A), 6gt0(A), 6gt2(A), 6gti(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: MLI × 1 Malonate ion PDB code: 6gt2(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 6gsq(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 3 Acetate ion PDB codes: 2bw4(A), 2bwd(A), 2bwi(A).
		2. Ligand: MLI × 9 Malonate ion PDB codes: 5i6l(A), 5n8i(A), 5of5(A), 6gt0(A), 6gt2(A), 6gti(A), 6gtk(A), 6gtl(A), 6gtn(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 5akr(A).