Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P23222
Ligand clusters for P23222: Sensor protein FixL OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=fixL PE=1 SV=1
Top 6 (of 12) ligand clusters
Cluster 1.
7 ligand types
19 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4gczA
Structures
PDB
Schematic diagram
4gcz
A
1y28
A
1drm
A
1lsw
A
1lt0
A
more ...
Cluster 1 contains 7 ligand types
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
FMN × 1
flavin mononucleotide
Flavin mononucleotide
PDB code:
4gcz
(A).
2. Ligand:
HEM × 10
Protoporphyrin IX containing fe
PDB codes:
1drm
(A),
1lsw
(A),
1xj3
(A),
1xj6
(A),
1y28
(A),
2cmn
(A),
2owh
(A),
2vv6
(A),
2vv7
(A),
2vv8
(A).
3. Ligand:
HEM-CMO × 4
HEM
=Protoporphyrin IX containing fe,
CMO
=Carbon monoxide.
PDB codes:
1lsv
(A),
1xj2
(A),
1xj4
(A),
2owj
(A).
4. Ligand:
CYN-HEM × 1
CYN
=Cyanide ion,
HEM
=Protoporphyrin IX containing fe.
PDB code:
1lt0
(A).
5. Ligand:
HEM-1MZ × 1
HEM
=Protoporphyrin IX containing fe,
1MZ
=1-Methylimidazole.
PDB code:
1lsx
(A).
6. Ligand:
IMD-HEM × 1
IMD
=Imidazole,
HEM
=Protoporphyrin IX containing fe.
PDB code:
1dp9
(A).
7. Ligand:
OXY-HEM × 1
OXY
=Oxygen molecule,
HEM
=Protoporphyrin IX containing fe.
PDB code:
1dp6
(A).
Cluster 2 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ADP × 1
Adenosine-5'-Diphosphate
PDB code:
4gcz
(A).
Cluster 3 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4gcz
(A).
Cluster 4 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4gcz
(A).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4gcz
(A).
Cluster 6 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4gcz
(A).