Ligand clusters for UniProt code P21524

Ligand clusters for P21524: Ribonucleoside-diphosphate reductase large chain 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

		6 ligand clusters Cluster 1. 4 ligand types 4 ligands Cluster 2. 8 ligand types 11 ligands Cluster 3. 5 ligand types 15 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 1zyzA

Structures

PDB		Schematic diagram
1zyzA
3tbaA
3s8aA
3s8bA
2cvyA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: ASN-PHE-ASP-ASP-ASP-PHE × 1 PDB code: 1zzd(A).
		2. Ligand: MRT × 1 (5r,9s,12s,15s,18s,21s)-21-Benzyl-12,18- Bis(carboxymethyl)-15-Cyclohexyl-1-(9h-Fluoren-9-Yl)- 4- Methyl-9-(2-Methylpropyl)-3,6,10,13,16,19-Hexaoxo-5- Phenyl-2-Oxa-4,8,11,14,17,20-Hexaazadocosan- 22-Oic acid PDB code: 2zlg(A).
		3. Ligand: PHE-THR-LEU-ASP-ALA-ASP-PHE × 1 PDB code: 2zlf(A).
		4. Ligand: PHE-THR-PHE-ASN-GLU-ASP-PHE × 1 PDB code: 2cvy(A).

Cluster 2 contains 8 ligand types

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Ligand		Description
		1. Ligand: CDP × 1 Cytidine-5'-Diphosphate PDB code: 2cvu(A).
		2. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 2cvx(A).
		3. Ligand: GDP × 1 Guanosine-5'-Diphosphate PDB code: 2cvw(A).
		4. Ligand: UDP × 1 Uridine-5'-Diphosphate PDB code: 2cvv(A).
		5. Ligand: GCQ × 1 Gemcitabine diphosphate PDB code: 2eud(A).
		6. Ligand: CDP × 3 Cytidine-5'-Diphosphate PDB codes: 3s8b(A), 3s8c(A), 3tb9(A).
		7. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 3s87(A), 3tba(A).
		8. Ligand: 2A5 × 1 2'-Deoxy-2'-(2-Hydroxyethyl)adenosine 5'-(Trihydrogen diphosphate) PDB code: 3k8t(A).

Cluster 3 contains 5 ligand types

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Ligand		Description
		1. Ligand: DGT × 1 2'-Deoxyguanosine-5'-Triphosphate PDB code: 2cvx(A).
		2. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 2cvw(A), 2cvy(A).
		3. Ligand: ANP × 7 Phosphoaminophosphonic acid-Adenylate ester PDB codes: 2cvt(A), 2cvu(A), 2cvv(A), 2eud(A), 3s8b(A), 3s8c(A), 3tb9(A).
		4. Ligand: DGT × 4 2'-Deoxyguanosine-5'-Triphosphate PDB codes: 3k8t(A), 3s87(A), 3s8a(A), 3tba(A).
		5. Ligand: N5P × 1 1-{2-Deoxy-5-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]oxy}phosphoryl]-Beta-D-Erythro- Pentofuranosyl}-5-Nitro-1h-Indole PDB code: 3rsr(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2zlg(A), 3k8t(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2zlg(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLY × 1 glycine PDB code: 1zyz(A).