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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code P19909
Ligand clusters for P19909: Immunoglobulin G-binding protein G from Streptococcus sp. group G
Top 6 (of 14) ligand clusters
Cluster 1.
11 ligand types
16 ligands
Cluster 2.
5 ligand types
8 ligands
Cluster 3.
7 ligand types
13 ligands
Cluster 4.
2 ligand types
4 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
3 ligand types
3 ligands
Representative protein: 4ozaA
Structures
PDB
Schematic diagram
4oza
A
6che
A
5bmi
A
6nl7
A
6kmc
A
more ...
Cluster 1 contains 11 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
4ozb
(A),
4wh4
(A).
2. Ligand:
IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code:
2qmt
(A).
_Zn
3. Metal:
_ZN × 1
PDB code:
6nl6
(A).
4. Ligand:
PO4 × 4
Phosphate ion
PDB codes:
6cpz
(A),
6nl7
(A),
_Cl
5. Metal:
_CL × 2
PDB codes:
6nl6
(A),
6nla
(A).
6. Ligand:
2PE × 1
Nonaethylene glycol
PDB code:
3v3x
(A).
7. Ligand:
DPO × 1
Diphosphate
PDB code:
6nl7
(A).
8. Ligand:
MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code:
2qmt
(A).
9. Ligand:
MTN × 1
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB code:
3v3x
(A).
10. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4ozc
(A).
_Na
11. Metal:
_NA × 1
PDB code:
6nl7
(A).
Cluster 2 contains 5 ligand types
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Ligand
Description
1. Ligand:
IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code:
2qmt
(A).
_Zn
2. Metal:
_ZN × 1
PDB code:
6nl7
(A).
3. Ligand:
MTN × 3
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB codes:
3v3x
(A),
5bmh
(A),
5bmi
(A).
4. Ligand:
ACT × 2
Acetate ion
PDB codes:
6nl7
(A),
5. Ligand:
MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code:
6cpz
(A).
Cluster 3 contains 7 ligand types
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
4wh4
(A),
6nla
(A).
_Zn
2. Metal:
_ZN × 2
PDB codes:
6nl8
(A),
6nla
(A).
_Cl
3. Metal:
_CL × 3
PDB codes:
6nl8
(A),
6nla
(A).
4. Ligand:
MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
6c9o
(A),
6che
(A).
5. Ligand:
PO4 × 1
Phosphate ion
PDB code:
6cte
(A).
6. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4wh4
(A).
_Ca
7. Metal:
_CA × 1
PDB code:
3fil
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
MTN × 3
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB codes:
5bmg
(A),
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
6cte
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
MTN × 1
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB code:
3v3x
(A).
Cluster 6 contains 3 ligand types
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Ligand
Description
1. Ligand:
ACY × 1
acetic acid
Acetic acid
PDB code:
6kmc
(A).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
2qmt
(A).
_Na
3. Metal:
_NA × 1
PDB code:
6nla
(A).