Ligand clusters for UniProt code P18946

Ligand clusters for P18946: Cytochrome b from Gallus gallus

		Top 6 (of 10) ligand clusters Cluster 1. 13 ligand types 16 ligands Cluster 2. 12 ligand types 88 ligands Cluster 3. 3 ligand types 44 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 17 ligands
Representative protein: 3cwbC

Structures

PDB		Schematic diagram
3cwbC
3bccC
3h1iC
3h1jC
2bccC
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: IKR × 2 Methyl (2e)-{2-[(4-Iodo-2,5-Dimethylphenoxy) methyl]phenyl}(methoxyimino)ethanoate PDB codes: 3h1k(C), 3l72(C).
		2. Ligand: SIG × 2 Stigmatellin PDB codes: 2bcc(C), 3bcc(C).
		3. Ligand: SMA × 2 Stigmatellin a PDB codes: 3h1i(C), 3h1j(C).
		4. Ligand: 3H1 × 1 3-Chloro-4,6-Dihydroxy-2-Methyl-5-{(2e,4e)-3-Methyl-5- [(1r,2r,6r)-1,2,6-Trimethyl-3- Oxocyclohexyl]penta-2,4- Dien-1-Yl}benzaldehyde PDB code: 3h1l(C).
		5. Ligand: AZO × 1 Methyl (2z)-2-(2-{[6-(2-Cyanophenoxy)pyrimidin-4- Yl]oxy}phenyl)-3-Methoxyacrylate PDB code: 3l71(C).
		6. Ligand: FMX × 1 Famoxadone PDB code: 3l74(C).
		7. Ligand: FNM × 1 (5s)-5-Methyl-2-(Methylsulfanyl)-5-Phenyl-3- (Phenylamino)-3,5-Dihydro-4h-Imidazol-4-One PDB code: 3l75(C).
		8. Ligand: ICX × 1 Methyl n-[(5z)-6-({[4-(4-Iodobenzyl) phenyl]carbonyl}amino)hex-5-Enoyl]glycinate PDB code: 3cwb(C).
		9. Ligand: JZV × 1 Methyl (2e)-(Methoxyimino)(2-{[({(1z)-1-[3- (Trifluoromethyl)phenyl]ethylidene}amino) oxy]methyl}phenyl)ethanoate PDB code: 3l70(C).
		10. Ligand: JZZ × 1 4-[7-(3,3-Dimethylbut-1-Yn-1-Yl)naphthalen-1-Yl]-5- Methoxy-2-Methyl-2,4-Dihydro-3h-1,2,4-Triazol- 3-One PDB code: 3l73(C).
		11. Ligand: PEE × 1 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB code: 4u3f(C).
		12. Ligand: WF3 × 1 Methyl (2e)-3-Methoxy-2-[2-({[6-Methyl-3- (Trifluoromethyl)quinoxalin-2- Yl]oxy}methyl) phenyl]prop-2-Enoate PDB code: 3tgu(C).
		13. Ligand: Y52 × 1 Methyl (2e)-3-Methoxy-2-(2-{[(5-Methoxy-1,3- Benzothiazol-2-Yl)sulfanyl]methyl}phenyl)prop-2-Enoate PDB code: 4u3f(C).

Cluster 2 contains 12 ligand types

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Ligand		Description
		1. Ligand: _UQ × 11 ubidecarenone Coenzyme q10, (2z,6e,10z,14e,18e,22e,26z)-Isomer PDB codes: 3cwb(C), 3h1h(C), 3h1j(C), 3h1k(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C).
		2. Ligand: U10 × 1 Ubiquinone-10 PDB code: 1bcc(C).
		3. Ligand: BOG × 2 Octyl beta-D-Glucopyranoside PDB codes: 1bcc(C), 2bcc(C).
		4. Ligand: HEM × 1 Protoporphyrin IX containing fe PDB code: 1bcc(C).
		5. Ligand: PEE × 32 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 1bcc(C), 2bcc(C), 3cwb(C), 3h1h(C), 3h1i(C), 3h1j(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C),
		6. Ligand: BOG × 18 Octyl beta-D-Glucopyranoside PDB codes: 3cwb(C), 3h1h(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C).
		7. Ligand: HEM × 16 Protoporphyrin IX containing fe PDB codes: 2bcc(C), 3bcc(C), 3cwb(C), 3h1h(C), 3h1i(C), 3h1j(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C).
		8. Ligand: U10 × 2 Ubiquinone-10 PDB codes: 2bcc(C), 4u3f(C).
		9. Ligand: PLC × 2 Diundecyl phosphatidyl choline PDB codes: 3h1i(C), 3h1j(C).
		10. Ligand: 3H1 × 1 3-Chloro-4,6-Dihydroxy-2-Methyl-5-{(2e,4e)-3-Methyl-5- [(1r,2r,6r)-1,2,6-Trimethyl-3- Oxocyclohexyl]penta-2,4- Dien-1-Yl}benzaldehyde PDB code: 3h1l(C).
		11. Ligand: AMY × 1 Antimycin PDB code: 3bcc(C).
		12. Ligand: ANY × 1 2-Methyl-Butyric acid 3-(3-Formylamino-2-Hydroxy- Benzoylamino)-8-Heptyl-2,6-Dimethyl-4,9-Dioxo- [1, 5]dioxonan-7-Yl ester PDB code: 3h1i(C).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: PEE × 2 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 1bcc(C), 2bcc(C).
		2. Ligand: CDL × 28 Cardiolipin PDB codes: 3cwb(C), 3h1h(C), 3h1i(C), 3h1j(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C),
		3. Ligand: PEE × 14 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 3cwb(C), 3h1h(C), 3h1i(C), 3h1j(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEE × 1 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB code: 4u3f(C).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEE × 1 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB code: 4u3f(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: HEM × 17 Protoporphyrin IX containing fe PDB codes: 1bcc(C), 2bcc(C), 3bcc(C), 3cwb(C), 3h1h(C), 3h1i(C), 3h1j(C), 3h1k(C), 3h1l(C), 3l70(C), 3l71(C), 3l72(C), 3l73(C), 3l74(C), 3l75(C), 3tgu(C), 4u3f(C).