Ligand clusters for UniProt code P15379

Ligand clusters for P15379: CD44 antigen from Mus musculus

		6 ligand clusters Cluster 1. 27 ligand types 39 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 2 ligand types 15 ligands Cluster 4. 2 ligand types 22 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 2jcrA

Structures

PDB		Schematic diagram
2jcrA
5bzfA
5bztA
4mrdA
4np3A
		more ...

Cluster 1 contains 27 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 8 glycerin Glycerol PDB codes: 4mrf(A), 4mrg(A), 5bzi(A), 5bzk(A), 5bzr(A), 5bzt(A).
		2. Ligand: SO4 × 4 Sulfate ion PDB codes: 4mrd(A), 4np2(A), 4np3(A), 5bzj(A).
		3. Ligand: MES × 2 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 4np2(A), 4np3(A).
		4. Ligand: NAG-BDP-NAG-BDP-NAG-BDP-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BDP=Beta-D-Glucopyranuronic acid. PDB codes: 2jcq(A), 2jcr(A).
		5. Ligand: 24W × 1 1,2,3,4-Tetrahydroisoquinolin-5-Amine PDB code: 4mrg(A).
		6. Ligand: 2C9 × 1 3-Methylbenzene-1,2-Diamine PDB code: 4mre(A).
		7. Ligand: 2CK × 1 1,2,3,4-Tetrahydroisoquinoline PDB code: 4mrf(A).
		8. Ligand: 2L1 × 1 2-[(4-Methyl-1h-Imidazol-5-Yl)methyl]-1,2,3,4- Tetrahydroisoquinoline PDB code: 4np2(A).
		9. Ligand: 2L2 × 1 2-[(4-Methyl-1h-Imidazol-5-Yl)methyl]-1,2,3,4- Tetrahydroisoquinolin-8-Amine PDB code: 4np3(A).
		10. Ligand: 4WN × 1 2-[2-(1-Methyl-1h-Imidazol-2-Yl)ethyl]-1,2,3,4- Tetrahydroisoquinolin-8-Amine PDB code: 5bzj(A).
		11. Ligand: 4WO × 1 Methyl 3-(8-Amino-3,4-Dihydroisoquinolin-2(1h)-Yl) propanoate PDB code: 5bzl(A).
		12. Ligand: 4WP × 1 Methyl 3-(3,4-Dihydroisoquinolin-2(1h)-Yl)propanoate PDB code: 5bzk(A).
		13. Ligand: 4WT × 1 4,4-Dimethyl-1,2,3,4-Tetrahydroisoquinoline PDB code: 5bzc(A).
		14. Ligand: 4WU × 1 1,2,3,4-Tetrahydroisoquinolin-8-Amine PDB code: 5bzi(A).
		15. Ligand: 4X1 × 1 3-(3,4-Dihydroisoquinolin-2(1h)-Yl)propan-1-Amine PDB code: 5bzh(A).
		16. Ligand: 4X3 × 1 2-Ethyl-1,2,3,4-Tetrahydroisoquinolin-5-Amine PDB code: 5bzf(A).
		17. Ligand: 4X6 × 1 2-Methyl-1,2,3,4-Tetrahydroisoquinolin-5-Amine PDB code: 5bzg(A).
		18. Ligand: 4X8 × 1 2-[(4-Amino-3-Methylpyridin-2-Yl)methyl]-1,2,3,4- Tetrahydroisoquinolin-8-Amine PDB code: 5bzm(A).
		19. Ligand: 4XC × 1 3-(8-Amino-3,4-Dihydroisoquinolin-2(1h)-Yl)-N- Methylpropanamide PDB code: 5bzo(A).
		20. Ligand: 4XD × 1 2-(2-Methoxyethyl)-1,2,3,4-Tetrahydroisoquinolin-8- Amine PDB code: 5bzn(A).
+ more. Press for full list

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: 4XD × 1 2-(2-Methoxyethyl)-1,2,3,4-Tetrahydroisoquinolin-8- Amine PDB code: 5bzn(A).
		2. Ligand: 4XJ × 1 2-(1,3-Dimethoxypropan-2-Yl)-1,2,3,4- Tetrahydroisoquinolin-8-Amine PDB code: 5bzt(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: SO4 × 14 Sulfate ion PDB codes: 4mrf(A), 4mrg(A), 4np3(A), 5bze(A), 5bzg(A), 5bzi(A), 5bzj(A), 5bzl(A), 5bzm(A), 5bzn(A), 5bzo(A), 5bzq(A), 5bzs(A), 5bzt(A).
		2. Ligand: 2CQ × 1 4-Chloro-5-Methylbenzene-1,2-Diamine PDB code: 4mrh(A).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 20 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4mre(A), 4mrf(A), 4mrg(A), 4mrh(A), 4np2(A), 4np3(A), 5bzc(A), 5bze(A), 5bzi(A), 5bzj(A), 5bzk(A), 5bzl(A), 5bzm(A), 5bzn(A), 5bzo(A), 5bzp(A), 5bzq(A), 5bzr(A), 5bzs(A), 5bzt(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2jcq(A), 2jcr(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5bzi(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5bzg(A), 5bzh(A).