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EBI
Databases
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PDBsum
Ligand clusters for UniProt code P15309
Ligand clusters for P15309: Prostatic acid phosphatase from Homo sapiens
6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
2 ligand types
4 ligands
Cluster 3.
5 ligand types
5 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1cviA
Structures
PDB
Schematic diagram
1cvi
A
2hpa
A
1nd6
A
1nd5
A
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code:
2hpa
(A).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
1nd5
(A).
3. Ligand:
NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose,
FUC
=Alpha-L-Fucopyranose.
PDB code:
1cvi
(A).
4. Ligand:
NAG-NAG-MAN-MAN × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB code:
1nd6
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG-NAG × 3
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes:
1nd5
(A),
1nd6
(A),
2hpa
(A).
2. Ligand:
NAG-NAG-BMA-MAN × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB code:
1cvi
(A).
Cluster 3 contains 5 ligand types
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
1nd6
(A).
2. Ligand:
GLY × 1
glycine
PDB code:
1cvi
(A).
3. Ligand:
PT3 × 1
N-Propyl-Tartramic acid
PDB code:
2hpa
(A).
4. Ligand:
2BF × 1
Alpha-Benzyl-Aminobenzyl-Phosphonic acid
PDB code:
1nd5
(A).
5. Ligand:
1PE × 1
Pentaethylene glycol
PDB code:
1nd5
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
1PE × 2
Pentaethylene glycol
PDB codes:
1nd5
(A),
1nd6
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
1PE × 1
Pentaethylene glycol
PDB code:
1nd5
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code:
1cvi
(A).