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Ligand clusters for UniProt code P14677

Ligand clusters for P14677: Penicillin-binding protein 2x from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

5 ligand clusters
Cluster 1.
5 ligand types
6 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
2 ligands
Representative protein: 1rp5A  
JSmol
 

Structures

PDB   Schematic diagram
1rp5A    
1qmeA    
1qmfA    
2z2lB    
2zc4B    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 1qme(A), 1rp5(A).


 
2. Ligand: BMG × 1
(4r,5s)-3-(6,7-Dihydro-5h-Pyrazolo[1,2-A][1,2, 4]triazol-4-Ium-6-Ylsulfanyl)-5-[(1s,2r)-1-Formyl-2-
Hydroxypropyl]-4-Methyl-4,5-Dihydro-1h-Pyrrole-2- Carboxylate
PDB code: 2zc3(B).


 
3. Ligand: CDS × 1
(2r)-2-[(1r)-1-{[(2z)-2-(2-Amino-1,3-Thiazol-4-Yl)-2- (Methoxyimino)acetyl]amino}-2-Oxoethyl]-5-
[(Z)-2-(4- Methyl-1,3-Thiazol-5-Yl)vinyl]-3,6-Dihydro-2h-1,3- Thiazine-4-Carboxylic acid
PDB code: 2z2m(B).


 
4. Ligand: CES × 1
2-[Carboxy-(2-Furan-2-Yl-2-Methoxyimino-Acetylamino)- Methyl]-5-Methyl-3,6-Dihydro-2h-
[1,3]thiazine-4- Carboxylic acid
PDB code: 1qmf(A).


 
5. Ligand: TEB × 1
(4r,5s)-3-(1-(4,5-Dihydrothiazol-2-Yl)azetidin-3- Ylthio)-5-((2s,3r)-3-Hydroxy-1-Oxobutan-2-Yl)-4-
Methyl-4,5- Dihydro-1h-Pyrrole-2-Carboxylic acid
PDB code: 2zc4(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: KEF × 1
Cefuroxime (oct-3-Ene form)
PDB code: 1qmf(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 1qme(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 1qme(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 2z2l(B), 2z2m(B).

 

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