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Ligand clusters for UniProt code P14677
Ligand clusters for P14677: Penicillin-binding protein 2x from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
5 ligand clusters
Cluster 1.
5 ligand types
6 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
2 ligands
Representative protein: 1rp5A
Structures
PDB
Schematic diagram
1rp5
A
1qme
A
1qmf
A
2z2l
B
2zc4
B
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
1qme
(A),
1rp5
(A).
2. Ligand:
BMG × 1
(4r,5s)-3-(6,7-Dihydro-5h-Pyrazolo[1,2-A][1,2, 4]triazol-4-Ium-6-Ylsulfanyl)-5-[(1s,2r)-1-Formyl-2-
Hydroxypropyl]-4-Methyl-4,5-Dihydro-1h-Pyrrole-2- Carboxylate
PDB code:
2zc3
(B).
3. Ligand:
CDS × 1
(2r)-2-[(1r)-1-{[(2z)-2-(2-Amino-1,3-Thiazol-4-Yl)-2- (Methoxyimino)acetyl]amino}-2-Oxoethyl]-5-
[(Z)-2-(4- Methyl-1,3-Thiazol-5-Yl)vinyl]-3,6-Dihydro-2h-1,3- Thiazine-4-Carboxylic acid
PDB code:
2z2m
(B).
4. Ligand:
CES × 1
2-[Carboxy-(2-Furan-2-Yl-2-Methoxyimino-Acetylamino)- Methyl]-5-Methyl-3,6-Dihydro-2h-
[1,3]thiazine-4- Carboxylic acid
PDB code:
1qmf
(A).
5. Ligand:
TEB × 1
(4r,5s)-3-(1-(4,5-Dihydrothiazol-2-Yl)azetidin-3- Ylthio)-5-((2s,3r)-3-Hydroxy-1-Oxobutan-2-Yl)-4-
Methyl-4,5- Dihydro-1h-Pyrrole-2-Carboxylic acid
PDB code:
2zc4
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
KEF × 1
Cefuroxime (oct-3-Ene form)
PDB code:
1qmf
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1qme
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1qme
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
2z2l
(B),
2z2m
(B).