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Ligand clusters for UniProt code P12333
Ligand clusters for P12333: Chlorophyll a-b binding protein, chloroplastic from Spinacia oleracea
5 ligand clusters
Cluster 1.
7 ligand types
66 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 1rwtA
Structures
PDB
Schematic diagram
1rwt
A
3jcu
G
4lcz
A
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
LUT × 6
lutein
(3r,3'R,6s)-4,5-Didehydro-5,6-Dihydro-Beta,Beta- Carotene-3,3'-Diol
PDB codes:
1rwt
(A),
3jcu
(G),
4lcz
(A),
2. Ligand:
CLA × 27
Chlorophyll a
PDB codes:
1rwt
(A),
3jcu
(G),
4lcz
(A),
3. Ligand:
CHL × 22
Chlorophyll b
PDB codes:
1rwt
(A),
3jcu
(G),
4lcz
(A),
4. Ligand:
LHG × 3
1,2-Dipalmitoyl-Phosphatidyl-Glycerole
PDB codes:
1rwt
(A),
3jcu
(G),
4lcz
(A).
5. Ligand:
NEX × 3
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r, 6r)-4-Hydroxy-2,2,6-Trimethyl-7-
Oxabicyclo[4.1.0]hept- 1-Yl]-3,7,12,16-Tetramethyloctadeca-1,3,5,7,9,11,13, 15,17-Nonaenylidene}-
1,5,5-Trimethylcyclohexane-1,3- Diol
PDB codes:
1rwt
(A),
3jcu
(G),
4lcz
(A).
6. Ligand:
XAT × 3
(3s,5r,6s,3'S,5'R,6'S)-5,6,5',6'-Diepoxy-5,6,5',6'- Tetrahydro-Beta,Beta-Carotene-3,3'-Diol
PDB codes:
1rwt
(A),
3jcu
(G),
7. Ligand:
DGD × 2
Digalactosyl diacyl glycerol (dgdg)
PDB codes:
1rwt
(A),
Cluster 2 contains 2 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 1
PDB code:
4lcz
(A).
2. Ligand:
CAC × 1
Cacodylate ion
PDB code:
4lcz
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 1
PDB code:
4lcz
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 1
PDB code:
4lcz
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
4lcz
(A).