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Ligand clusters for UniProt code P12263
Ligand clusters for P12263: Coagulation factor VIII from Sus scrofa
5 ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
3 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
3 ligands
Representative protein: 7k66A
Structures
PDB
Schematic diagram
7k66
A
6mf0
A
7kbt
A
4mo3
M
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code:
7k66
(A).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
7kbt
(A).
3. Ligand:
NAG-NAG-BMA-MAN-MAN × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB code:
6mf0
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG-NAG-BMA-MAN-MAN × 2
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB codes:
6mf0
(A),
7k66
(A).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
7kbt
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code:
7kbt
(A).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
7k66
(A).
3. Ligand:
NAG-NAG-BMA × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB code:
6mf0
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4mo3
(M).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 3
PDB codes:
6mf0
(A),
7k66
(A),
7kbt
(A).