Ligand clusters for UniProt code P10538

Ligand clusters for P10538: Beta-amylase from Glycine max

		Top 6 (of 19) ligand clusters Cluster 1. 12 ligand types 28 ligands Cluster 2. 1 ligand type 17 ligands Cluster 3. 1 ligand type 9 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 7 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1wdpA

Structures

PDB		Schematic diagram
1wdpA
1q6dA
1q6fA
1q6gA
1bfnA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: GLC × 2 d-glucose Alpha-D-Glucopyranose PDB codes: 1wdr(A), 1wds(A).
		2. Ligand: BME × 1 Beta-Mercaptoethanol PDB code: 1btc(A).
		3. Ligand: GLC-GLC × 8 GLC=Alpha-D-Glucopyranose. PDB codes: 1q6c(A), 1q6d(A), 1q6e(A), 1q6g(A), 1v3i(A), 1wdq(A),
		4. Ligand: BGC-GLC × 6 GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose. PDB codes: 1q6d(A), 1q6e(A), 1q6f(A), 1q6g(A), 1v3i(A), 1wds(A).
		5. Ligand: GLC-GLC-GLC-GLC × 2 GLC=Alpha-D-Glucopyranose. PDB codes: 1byb(A), 1wdr(A).
		6. Ligand: RR7-GLC × 2 RR7=2-Deoxy-Beta-D-Arabino-Hexopyranose, GLC=Alpha-D-Glucopyranose. PDB codes: 1byd(A),
		7. Ligand: SO4 × 2 Sulfate ion PDB codes: 1uko(A), 1wdp(A).
		8. Ligand: BGC-GLC-BGC × 1 BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose. PDB code: 1q6f(A).
		9. Ligand: BGC-GLC-GLC-GLC × 1 BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose. PDB code: 1byc(A).
		10. Ligand: GLC-GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 1v3h(A).
		11. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 1btc(A).
		12. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 1bfn(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 17 Sulfate ion PDB codes: 1bfn(A), 1btc(A), 1bya(A), 1byb(A), 1byc(A), 1byd(A), 1q6c(A), 1q6d(A), 1q6e(A), 1q6f(A), 1q6g(A), 1v3h(A), 1v3i(A), 1wdp(A), 1wdq(A), 1wdr(A), 1wds(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 9 Sulfate ion PDB codes: 1q6d(A), 1q6e(A), 1q6f(A), 1q6g(A), 1v3h(A), 1wdp(A), 1wdq(A), 1wdr(A), 1wds(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 1uko(A), 1ukp(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 7 Sulfate ion PDB codes: 1uko(A), 1ukp(A), 1v3h(A), 1wdp(A), 1wdq(A), 1wdr(A), 1wds(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1uko(A).