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Ligand clusters for UniProt code P0A9V1
Ligand clusters for P0A9V1: Lipopolysaccharide export system ATP-binding protein LptB OS=Escherichia coli (strain K12) OX=83333 GN=lptB PE=1 SV=2
Top 6 (of 8) ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6mbnA
Structures
PDB
Schematic diagram
6mbn
A
6mhz
A
6mi8
A
6mgf
A
4p33
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 5
PDB codes:
4p31
(A),
4p32
(A),
6b89
(A),
6b8b
(A),
6mgf
(A).
2. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4p33
(A).
3. Ligand:
ADP × 5
Adenosine-5'-Diphosphate
PDB codes:
4p31
(A),
4p32
(A),
6b89
(A),
6b8b
(A),
6mgf
(A).
4. Ligand:
AOV × 2
Adp orthovanadate
PDB codes:
6mhz
(A),
6mi8
(A).
5. Ligand:
ATP × 2
Adenosine-5'-Triphosphate
PDB codes:
4p33
(A),
6mbn
(A).
_Na
6. Metal:
_NA × 2
PDB codes:
4p33
(A),
6mbn
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
NOV × 1
novobiocin
Novobiocin
PDB code:
6b89
(A).
2. Ligand:
CZJ × 2
(3s,5s,7s)-N-{7-[(3-O-Carbamoyl-6-Deoxy-5-Methyl-4-O- Methyl-Beta-D-Gulopyranosyl)oxy]-4-Hydroxy-8-
Methyl-2- Oxo-2h-1-Benzopyran-3-Yl}tricyclo[3.3.1.1~3,7~]decane- 1-Carboxamide
PDB codes:
6b8b
(A),
6mgf
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4p33
(A).
2. Ligand:
NOV × 1
novobiocin
Novobiocin
PDB code:
6b89
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
AOV × 2
Adp orthovanadate
PDB codes:
6mhz
(A),
6mi8
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4p33
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4p33
(A).