spacer
spacer

Ligand clusters for UniProt code P0A9V1

Ligand clusters for P0A9V1: Lipopolysaccharide export system ATP-binding protein LptB OS=Escherichia coli (strain K12) OX=83333 GN=lptB PE=1 SV=2

Top 6 (of 8) ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6mbnA  
JSmol
 

Structures

PDB   Schematic diagram
6mbnA    
6mhzA    
6mi8A    
6mgfA    
4p33A    
 more ...

 

 Cluster 1 contains 6 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description

_Mg
 
1. Metal: _MG × 5
PDB codes: 4p31(A), 4p32(A), 6b89(A), 6b8b(A), 6mgf(A).


 
2. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4p33(A).


 
3. Ligand: ADP × 5
Adenosine-5'-Diphosphate
PDB codes: 4p31(A), 4p32(A), 6b89(A), 6b8b(A), 6mgf(A).


 
4. Ligand: AOV × 2
Adp orthovanadate
PDB codes: 6mhz(A), 6mi8(A).


 
5. Ligand: ATP × 2
Adenosine-5'-Triphosphate
PDB codes: 4p33(A), 6mbn(A).

_Na
 
6. Metal: _NA × 2
PDB codes: 4p33(A), 6mbn(A).

 

 Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NOV × 1
novobiocin
Novobiocin
PDB code: 6b89(A).


 
2. Ligand: CZJ × 2
(3s,5s,7s)-N-{7-[(3-O-Carbamoyl-6-Deoxy-5-Methyl-4-O- Methyl-Beta-D-Gulopyranosyl)oxy]-4-Hydroxy-8-
Methyl-2- Oxo-2h-1-Benzopyran-3-Yl}tricyclo[3.3.1.1~3,7~]decane- 1-Carboxamide
PDB codes: 6b8b(A), 6mgf(A).

 

 Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4p33(A).


 
2. Ligand: NOV × 1
novobiocin
Novobiocin
PDB code: 6b89(A).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: AOV × 2
Adp orthovanadate
PDB codes: 6mhz(A), 6mi8(A).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4p33(A).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4p33(A).

 

spacer

spacer