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EBI
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PDBsum
Ligand clusters for UniProt code P0A9T0
Ligand clusters for P0A9T0: D-3-phosphoglycerate dehydrogenase OS=Escherichia coli (strain K12) GN=serA PE=1 SV=2
Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
8 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
4 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1ybaA
Structures
PDB
Schematic diagram
1yba
A
1sc6
A
2pa3
A
1psd
A
2p9g
A
more ...
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAD × 2
Nicotinamide-Adenine-Dinucleotide
PDB codes:
1sc6
(A),
1yba
(A).
2. Ligand:
AKG × 1
2-Oxoglutaric acid
PDB code:
1yba
(A).
3. Ligand:
NAI × 4
nadh
1,4-Dihydronicotinamide adenine dinucleotide
PDB codes:
2p9c
(A),
2p9e
(A),
2p9g
(A),
2pa3
(A).
4. Ligand:
NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code:
1psd
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
AKG × 1
2-Oxoglutaric acid
PDB code:
1yba
(A).
2. Ligand:
CIT × 1
Citric acid
PDB code:
2p9e
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
CIT × 1
Citric acid
PDB code:
2p9e
(A).
2. Ligand:
UNL × 1
Unknown ligand
PDB code:
1yba
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
CIT × 1
Citric acid
PDB code:
2p9e
(A).
2. Ligand:
UNL × 1
Unknown ligand
PDB code:
1yba
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SER × 4
PDB codes:
2pa3
(A),
1psd
(A),
2p9c
(A),
2p9g
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SER × 1
PDB code:
2p9g
(A).