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EBI
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PDBsum
Ligand clusters for UniProt code P0A7E9
Ligand clusters for P0A7E9: Uridylate kinase OS=Escherichia coli (strain K12) GN=pyrH PE=1 SV=2
Top 6 (of 8) ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
6 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 2bndA
Structures
PDB
Schematic diagram
2bnd
A
2v4y
A
2bnf
A
2bne
A
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
GTP × 1
Guanosine-5'-Triphosphate
PDB code:
2v4y
(A).
2. Ligand:
U5P × 1
Uridine-5'-Monophosphate
PDB code:
2bne
(A).
3. Ligand:
UDP × 1
Uridine-5'-Diphosphate
PDB code:
2bnd
(A).
4. Ligand:
UTP × 1
Uridine 5'-Triphosphate
PDB code:
2bnf
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
2bne
(A),
2bnf
(A).
2. Ligand:
GTP × 1
Guanosine-5'-Triphosphate
PDB code:
2v4y
(A).
3. Ligand:
POP × 1
Pyrophosphate 2-
PDB code:
2bnd
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GTP × 1
Guanosine-5'-Triphosphate
PDB code:
2v4y
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GTP × 1
Guanosine-5'-Triphosphate
PDB code:
2v4y
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 6
Glycerol
PDB codes:
2bnd
(A),
2bne
(A),
2bnf
(A),
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
2bnd
(A),
2bnf
(A).