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Ligand clusters for UniProt code P0A6L2

Ligand clusters for P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase OS=Escherichia coli (strain K12) GN=dapA PE=1 SV=1

Top 6 (of 20) ligand clusters
Cluster 1.
4 ligand types
27 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
2 ligand types
5 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 5t26A  
JSmol
 

Structures

PDB   Schematic diagram
5t26A    
1dhpA    
1yxdA    
1yxcA    
2a6nA    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: GOL × 19
glycerin
Glycerol
PDB codes: 2pur(A), 3c0j(A), 3den(A), 3du0(A), 3i7q(A), 3i7r(A), 3i7s(A), 4eou(A),

__K
 
2. Metal: __K × 4
PDB codes: 3du0(A), 3i7q(A), 3i7r(A), 3i7s(A).


 
3. Ligand: LYS × 2
l-lysine
PDB codes: 1yxd(A),


 
4. Ligand: DLY × 2
D-Lysine
PDB codes: 2ats(A),

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3i7r(A).


 
2. Ligand: PO4 × 2
Phosphate ion
PDB codes: 3den(A), 3i7s(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: PYR × 1
pyruvic acid
Pyruvic acid
PDB code: 3i7s(A).

_Cl
 
2. Metal: _CL × 4
PDB codes: 1yxc(A), 1yxd(A), 2ats(A), 3i7r(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 2ojp(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3den(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3den(A).

 

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