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EBI
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PDBsum
Ligand clusters for UniProt code P0A445
Ligand clusters for P0A445: Photosystem Q(B) protein 1 OS=Synechococcus elongatus GN=psbA1 PE=3 SV=1
6 ligand clusters
Cluster 1.
7 ligand types
10 ligands
Cluster 2.
6 ligand types
12 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2axtA
Structures
PDB
Schematic diagram
2axt
A
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
BCR × 2
Beta-Carotene
PDB codes:
2axt
(A),
2. Ligand:
CLA × 2
Chlorophyll a
PDB codes:
2axt
(A),
3. Ligand:
LMT × 2
Dodecyl-Beta-D-Maltoside
PDB codes:
2axt
(A),
4. Ligand:
DGD × 1
Digalactosyl diacyl glycerol (dgdg)
PDB code:
2axt
(A).
5. Ligand:
MGE × 1
(1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate
PDB code:
2axt
(A).
6. Ligand:
SQD × 1
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB code:
2axt
(A).
7. Ligand:
UNK × 1
PDB code:
2axt
(A).
Cluster 2 contains 6 ligand types
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Ligand
Description
1. Ligand:
CLA × 4
Chlorophyll a
PDB codes:
2axt
(A),
2. Ligand:
DGD × 2
Digalactosyl diacyl glycerol (dgdg)
PDB codes:
2axt
(A),
3. Ligand:
MGE × 2
(1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate
PDB codes:
2axt
(A),
4. Ligand:
PHO × 2
Pheophytin a
PDB codes:
2axt
(A),
5. Ligand:
PQ9 × 1
5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27- Heptamethyloctacosa-2,6,10,14,18,22,26-Heptaenyl]-
2,3- Dimethylbenzo-1,4-Quinone
PDB code:
2axt
(A).
6. Ligand:
UNK × 1
PDB code:
2axt
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
LHG × 1
1,2-Dipalmitoyl-Phosphatidyl-Glycerole
PDB code:
2axt
(A).
2. Ligand:
SQD × 1
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB code:
2axt
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
UNK × 2
PDB codes:
2axt
(A),
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
BCT × 1
Bicarbonate ion
PDB code:
2axt
(A).
Fe2
2. Metal:
FE2 × 1
PDB code:
2axt
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
OEC × 1
Oxygen evolving system
PDB code:
2axt
(A).