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Ligand clusters for UniProt code P08337
Ligand clusters for P08337: 8-oxo-dGTP diphosphatase OS=Escherichia coli (strain K12) GN=mutT PE=1 SV=1
5 ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
2 ligands
Representative protein: 1ppxA
Structures
PDB
Schematic diagram
1ppx
A
3a6s
A
3a6v
A
1pus
A
1puq
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
8OG × 6
8-Oxo-2'-Deoxy-Guanosine-5'-Monophosphate
PDB codes:
1ppx
(A),
1pun
(A),
1puq
(A),
1pus
(A),
3a6t
(A),
3a6u
(A).
2. Ligand:
TLA × 3
L(+)-Tartaric acid
PDB codes:
3a6s
(A),
3a6v
(A),
_Mn
3. Metal:
_MN × 3
PDB codes:
3a6u
(A),
3a6v
(A),
_Na
4. Metal:
_NA × 3
PDB codes:
3a6s
(A),
3a6t
(A),
3a6v
(A).
5. Ligand:
APC-CON × 1
APC
=Diphosphomethylphosphonic acid adenosyl ester,
CON
=Cobalt tetraammine ion.
PDB code:
1tum
(A).
_Mg
6. Metal:
_MG × 1
PDB code:
1tum
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
3a6t
(A),
3a6u
(A).
2. Ligand:
SUC × 1
Sucrose
PDB code:
3a6t
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
TLA × 1
L(+)-Tartaric acid
PDB code:
3a6v
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3a6t
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
_Mn
1. Metal:
_MN × 1
PDB code:
3a6v
(A).
_Na
2. Metal:
_NA × 1
PDB code:
3a6v
(A).