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Ligand clusters for UniProt code P08337

Ligand clusters for P08337: 8-oxo-dGTP diphosphatase OS=Escherichia coli (strain K12) GN=mutT PE=1 SV=1

5 ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
2 ligands
Representative protein: 1ppxA  
JSmol
 

Structures

PDB   Schematic diagram
1ppxA    
3a6sA    
3a6vA    
1pusA    
1puqA    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: 8OG × 6
8-Oxo-2'-Deoxy-Guanosine-5'-Monophosphate
PDB codes: 1ppx(A), 1pun(A), 1puq(A), 1pus(A), 3a6t(A), 3a6u(A).


 
2. Ligand: TLA × 3
L(+)-Tartaric acid
PDB codes: 3a6s(A), 3a6v(A),

_Mn
 
3. Metal: _MN × 3
PDB codes: 3a6u(A), 3a6v(A),

_Na
 
4. Metal: _NA × 3
PDB codes: 3a6s(A), 3a6t(A), 3a6v(A).


 
5. Ligand: APC-CON × 1
APC=Diphosphomethylphosphonic acid adenosyl ester, CON=Cobalt tetraammine ion.
PDB code: 1tum(A).

_Mg
 
6. Metal: _MG × 1
PDB code: 1tum(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 3a6t(A), 3a6u(A).


 
2. Ligand: SUC × 1
Sucrose
PDB code: 3a6t(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: TLA × 1
L(+)-Tartaric acid
PDB code: 3a6v(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3a6t(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 1
PDB code: 3a6v(A).

_Na
 
2. Metal: _NA × 1
PDB code: 3a6v(A).

 

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