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Ligand clusters for UniProt code P07987

Ligand clusters for P07987: Exoglucanase 2 OS=Hypocrea jecorina GN=cbh2 PE=1 SV=1

Top 6 (of 21) ligand clusters
Cluster 1.
8 ligand types
13 ligands
Cluster 2.
2 ligand types
37 ligands
Cluster 3.
3 ligand types
11 ligands
Cluster 4.
3 ligand types
9 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
2 ligand types
10 ligands
Representative protein: 4i5rA  
JSmol
 

Structures

PDB   Schematic diagram
4i5rA    
1hgwA    
1cb2A    
1qk2A    
1qk0A    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: GLC × 2
Alpha-D-Glucose
PDB codes: 1hgy(A),


 
2. Ligand: GOL × 1
Glycerol
PDB code: 1qjw(A).


 
3. Ligand: EDO × 4
1,2-Ethanediol
PDB codes: 4i5r(A), 4i5u(A),


 
4. Ligand: MGL-SGC-GLC-GLC × 2
MGL=O1-Methyl-Glucose, SGC=4-Deoxy-4-Thio-Beta-D-Glucopyranose, GLC=Alpha-D-Glucose.
PDB codes: 1qjw(A), 1qk2(A).


 
5. Ligand: 4MU-BGC-BGC-BGC-BGC × 1
4MU=7-Hydroxy-4-Methyl-2h-Chromen-2-One, BGC=Beta-D-Glucose.
PDB code: 4ax7(A).


 
6. Ligand: IOB-XYP-BGC × 1
XYP=Beta-D-Xylopyranose, BGC=Beta-D-Glucose, IOB=3-Iodo-Benzyl alcohol.
PDB code: 1qk0(A).


 
7. Ligand: UWU-BGC-BGC × 1
BGC=Beta-D-Glucose, UWU=6-Chloranyl-7-Oxidanyl-4-Phenyl-Chromen-2-One.
PDB code: 4ax6(A).


 
8. Ligand: XZZ-BGC-BGC × 1
BGC=Beta-D-Glucose, XZZ=6-Chloro-7-Hydroxy-4-Methyl-2h-Chromen-2-One.
PDB code: 4au0(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: MAN × 36
Alpha-D-Mannose
PDB codes: 1cb2(A), 1hgw(A), 1hgy(A), 1qjw(A), 1qk0(A), 1qk2(A), 4au0(A), 4ax6(A), 4ax7(A),


 
2. Ligand: PG4 × 1
Tetraethylene glycol
PDB code: 4i5r(A).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 9
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1cb2(A), 1hgw(A), 1hgy(A), 1qjw(A), 1qk0(A), 1qk2(A), 4au0(A), 4ax6(A), 4ax7(A).


 
2. Ligand: ACT × 1
acetic acid
Acetate ion
PDB code: 4i5u(A).


 
3. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4i5u(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: MAN × 5
Alpha-D-Mannose
PDB codes: 1cb2(A), 1hgw(A), 1qjw(A), 1qk0(A), 1qk2(A).


 
2. Ligand: BMA × 1
Beta-D-Mannose
PDB code: 1hgy(A).


 
3. Ligand: MAN × 3
Alpha-D-Mannose
PDB codes: 4au0(A), 4ax6(A), 4ax7(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: PG4 × 1
Tetraethylene glycol
PDB code: 4i5u(A).


 
2. Ligand: PGE × 1
Triethylene glycol
PDB code: 4i5r(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 9
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1cb2(A), 1hgw(A), 1hgy(A), 1qjw(A), 1qk0(A), 1qk2(A), 4au0(A), 4ax6(A), 4ax7(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4i5u(A).

 

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