Ligand clusters for UniProt code P07267

Ligand clusters for P07267: Saccharopepsin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PEP4 PE=1 SV=1

		6 ligand clusters Cluster 1. 11 ligand types 13 ligands Cluster 2. 6 ligand types 6 ligands Cluster 3. 2 ligand types 10 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 1dp5A

Structures

PDB		Schematic diagram
1dp5A
1dpjA
1g0vA
1fq5A
1fq6A
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: MAN × 2 Alpha-D-Mannose PDB codes: 1fmu(A),
		2. Ligand: NAG-NAG-MAN-MAN-BMA × 2 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, BMA=Beta-D-Mannose. PDB codes: 1fq5(A), 1fq8(A).
		3. Ligand: BMA-MAN-BMA-NAG-NAG-MAN-MAN-MAN-BMA × 1 BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine. PDB code: 1dp5(A).
		4. Ligand: BMA-MAN-MAN-BMA-NAG-NAG-MAN-MAN × 1 BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine. PDB code: 1g0v(A).
		5. Ligand: BMA-MAN-MAN-BMA-NAG-NAG-MAN-MAN-MAN × 1 BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine. PDB code: 1dpj(A).
		6. Ligand: BMA-NAG-NAG × 1 BMA=Beta-D-Mannose, NAG=N-Acetyl-D-Glucosamine. PDB code: 1fmx(A).
		7. Ligand: NAG-NAG-BMA-BMA-BGC × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, BGC=Beta-D-Glucose. PDB code: 1fq4(A).
		8. Ligand: NAG-NAG-BMA-BMA-GUP × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, GUP=Alpha-L-Gulopyranoside. PDB code: 1fq6(A).
		9. Ligand: NAG-NAG-BMA-BMA-KBG × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, KBG=2-Keto-Beta-D-Glucose. PDB code: 1fq7(A).
		10. Ligand: NAG-NAG-BMA-BMA-MAN × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB code: 2jxr(A).
		11. Ligand: NAG-NDG × 1 NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose. PDB code: 1fmu(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: 0GM × 1 N-[(5s,9s,10s,13s)-9-Hydroxy-5,10-Bis(2-Methylpropyl)- 4,7,12,16-Tetraoxo-3,6,11,17- Tetraazabicyclo[17.3.1]tricosa-1(23),19,21-Trien-13- Yl]-3-(Naphthalen-1-Yl)-2-(Naphthalen-1- Ylmethyl) propanamide PDB code: 1fq5(A).
		2. Ligand: 0QF × 1 N-[(1r)-2-{[(1r,2r,3s)-1-(Cyclohexylmethyl)-2,3- Dihydroxy-5-Methylhexyl]amino}-1-(Ethylsulfanyl)- 2- Oxoethyl]-Nalpha-(Morpholin-4-Ylsulfonyl)-D- Phenylalaninamide PDB code: 1fq6(A).
		3. Ligand: 2Y2 × 1 N-[(2r)-1-{[(2s,3r,5r)-1-Cyclohexyl-3-Hydroxy-5-{[2- (Morpholin-4-Yl)ethyl]carbamoyl}oct-7-Yn-2- Yl]amino}- 3-(Methylsulfanyl)-1-Oxopropan-2-Yl]-1h-Benzimidazole- 2-Carboxamide PDB code: 1fq4(A).
		4. Ligand: 2Y3 × 1 N-(Tert-Butoxycarbonyl)-L-Phenylalanyl-N-[(2s,3s,5r)-1- Cyclohexyl-3-Hydroxy-7-Methyl-5- (Methylcarbamoyl) octan-2-Yl]-L-Histidinamide PDB code: 1fq7(A).
		5. Ligand: 2Y4 × 1 N-[(2s)-1-[[(2s)-1-[[(2s,3r)-1-Cyclohexyl-4,4-Difluoro- 3-Hydroxy-5-(Methylamino)-5-Oxo-Pentan-2- Yl]amino]-1- Oxo-Hexan-2-Yl]amino]-1-Oxo-3-Phenyl-Propan-2- Yl]morpholine-4-Carboxamide PDB code: 1fq8(A).
		6. Ligand: 2Z3 × 1 N-(Morpholin-4-Ylcarbonyl)-L-Phenylalanyl-N-[(1r)-1- (Cyclohexylmethyl)-3,3-Difluoro-2,2-Dihydroxy- 4- (Methylamino)-4-Oxobutyl]-L-Norleucinamide PDB code: 2jxr(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 5 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB codes: 1dpj(A), 1fmx(A), 1fq7(A), 1fq8(A), 1g0v(A).
		2. Ligand: NDG × 5 2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose PDB codes: 1fmu(A), 1fq4(A), 1fq5(A), 1fq6(A), 2jxr(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1dpj(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1dpj(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1dpj(A).