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Ligand clusters for UniProt code P07014

Ligand clusters for P07014: Succinate dehydrogenase iron-sulfur subunit from Escherichia coli (strain K12)

6 ligand clusters
Cluster 1.
7 ligand types
20 ligands
Cluster 2.
1 ligand type
11 ligands
Cluster 3.
1 ligand type
12 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
12 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1nekB  
JSmol
 

Structures

PDB   Schematic diagram
1nekB    
2ad0B    
2wdvB    
2ws3B    
2aczB    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: UQ2 × 1
Ubiquinone-2
PDB code: 1nek(B).


 
2. Ligand: AT5 × 1
3-[(2s,4s,5r)-5,6-Dichloro-2,4-Dimethyl-1-Oxohexyl]-4- Hydroxy-5,6-Dimethoxy-2(1h)-Pyridinone
PDB code: 2acz(B).


 
3. Ligand: DNT × 1
2-[1-Methylhexyl]-4,6-Dinitrophenol
PDB code: 1nen(B).


 
4. Ligand: HEM × 9
Protoporphyrin IX containing fe
PDB codes: 1nek(B), 1nen(B), 2wdq(B), 2wdr(B), 2wdv(B), 2wp9(B), 2ws3(B), 2wu2(B), 2wu5(B).


 
5. Ligand: CBE × 6
2-Methyl-N-Phenyl-5,6-Dihydro-1,4-Oxathiine-3- Carboxamide
PDB codes: 2ad0(B), 2wdq(B), 2wp9(B), 2ws3(B), 2wu2(B), 2wu5(B).


 
6. Ligand: UQ2 × 1
Ubiquinone-2
PDB code: 7jz2(B).


 
7. Ligand: PCI × 1
Pentachlorophenol
PDB code: 2wdr(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 11
Iron/sulfur cluster
PDB codes: 1nek(B), 1nen(B), 2acz(B), 2wdq(B), 2wdr(B), 2wdv(B), 2wp9(B), 2ws3(B), 2wu2(B), 2wu5(B), 7jz2(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: F3S × 12
Fe3-S4 cluster
PDB codes: 1nek(B), 1nen(B), 2acz(B), 2ad0(B), 2wdq(B), 2wdr(B), 2wdv(B), 2wp9(B), 2ws3(B), 2wu2(B), 2wu5(B), 7jz2(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 2wdq(B).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: FES × 12
Fe2/s2 (inorganic) cluster
PDB codes: 1nek(B), 1nen(B), 2acz(B), 2ad0(B), 2wdq(B), 2wdr(B), 2wdv(B), 2wp9(B), 2ws3(B), 2wu2(B), 2wu5(B), 7jz2(B).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 3
PDB codes: 1nek(B), 1nen(B), 2ad0(B).

 

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