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Ligand clusters for UniProt code P07014
Ligand clusters for P07014: Succinate dehydrogenase iron-sulfur subunit from Escherichia coli (strain K12)
6 ligand clusters
Cluster 1.
7 ligand types
20 ligands
Cluster 2.
1 ligand type
11 ligands
Cluster 3.
1 ligand type
12 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
12 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1nekB
Structures
PDB
Schematic diagram
1nek
B
2ad0
B
2wdv
B
2ws3
B
2acz
B
more ...
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
UQ2 × 1
Ubiquinone-2
PDB code:
1nek
(B).
2. Ligand:
AT5 × 1
3-[(2s,4s,5r)-5,6-Dichloro-2,4-Dimethyl-1-Oxohexyl]-4- Hydroxy-5,6-Dimethoxy-2(1h)-Pyridinone
PDB code:
2acz
(B).
3. Ligand:
DNT × 1
2-[1-Methylhexyl]-4,6-Dinitrophenol
PDB code:
1nen
(B).
4. Ligand:
HEM × 9
Protoporphyrin IX containing fe
PDB codes:
1nek
(B),
1nen
(B),
2wdq
(B),
2wdr
(B),
2wdv
(B),
2wp9
(B),
2ws3
(B),
2wu2
(B),
2wu5
(B).
5. Ligand:
CBE × 6
2-Methyl-N-Phenyl-5,6-Dihydro-1,4-Oxathiine-3- Carboxamide
PDB codes:
2ad0
(B),
2wdq
(B),
2wp9
(B),
2ws3
(B),
2wu2
(B),
2wu5
(B).
6. Ligand:
UQ2 × 1
Ubiquinone-2
PDB code:
7jz2
(B).
7. Ligand:
PCI × 1
Pentachlorophenol
PDB code:
2wdr
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 11
Iron/sulfur cluster
PDB codes:
1nek
(B),
1nen
(B),
2acz
(B),
2wdq
(B),
2wdr
(B),
2wdv
(B),
2wp9
(B),
2ws3
(B),
2wu2
(B),
2wu5
(B),
7jz2
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
F3S × 12
Fe3-S4 cluster
PDB codes:
1nek
(B),
1nen
(B),
2acz
(B),
2ad0
(B),
2wdq
(B),
2wdr
(B),
2wdv
(B),
2wp9
(B),
2ws3
(B),
2wu2
(B),
2wu5
(B),
7jz2
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2wdq
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
FES × 12
Fe2/s2 (inorganic) cluster
PDB codes:
1nek
(B),
1nen
(B),
2acz
(B),
2ad0
(B),
2wdq
(B),
2wdr
(B),
2wdv
(B),
2wp9
(B),
2ws3
(B),
2wu2
(B),
2wu5
(B),
7jz2
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Ca
1. Metal:
_CA × 3
PDB codes:
1nek
(B),
1nen
(B),
2ad0
(B).