Ligand clusters for UniProt code P06202

Ligand clusters for P06202: Periplasmic oligopeptide-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=oppA PE=1 SV=2

		Top 6 (of 14) ligand clusters Cluster 1. 32 ligand types 33 ligands Cluster 2. 3 ligand types 27 ligands Cluster 3. 3 ligand types 23 ligands Cluster 4. 3 ligand types 25 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 8 ligands
Representative protein: 1b05A

Structures

PDB		Schematic diagram
1b05A
2rkmA
1jeuA
1olcA
1b40A
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Cluster 1 contains 32 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: ACT × 2 acetic acid Acetate ion PDB codes: 1b2h(A), 2olb(A).
		2. Ligand: LYS-ALA-LYS × 1 PDB code: 1jet(A).
		3. Ligand: LYS-ALC-LYS × 1 ALC=2-Amino-3-Cyclohexyl-Propionic acid. PDB code: 1b3h(A).
		4. Ligand: LYS-ALN-LYS × 1 ALN=Naphthalen-2-Yl-3-Alanine. PDB code: 1b0h(A).
		5. Ligand: LYS-ARG-LYS × 1 PDB code: 1qka(A).
		6. Ligand: LYS-ASN-LYS × 1 PDB code: 1b5i(A).
		7. Ligand: LYS-ASP-LYS × 1 PDB code: 1b4z(A).
		8. Ligand: LYS-CYS-LYS × 1 PDB code: 1b05(A).
		9. Ligand: LYS-DAB-LYS × 1 DAB=2,4-Diaminobutyric acid. PDB code: 1b4h(A).
		10. Ligand: LYS-DPP-LYS × 1 DPP=Diaminopropanoic acid. PDB code: 1b5h(A).
		11. Ligand: LYS-GLN-LYS × 1 PDB code: 1b5j(A).
		12. Ligand: LYS-GLU-LYS × 1 PDB code: 1jeu(A).
		13. Ligand: LYS-GLY-LYS × 1 PDB code: 1b3l(A).
		14. Ligand: LYS-HIS-LYS × 1 PDB code: 1b3f(A).
		15. Ligand: LYS-HPE-LYS × 1 HPE=Homophenylalanine. PDB code: 1b1h(A).
		16. Ligand: LYS-ILE-LYS × 1 PDB code: 1b3g(A).
		17. Ligand: LYS-LEU-LYS × 1 PDB code: 1b9j(A).
		18. Ligand: LYS-LYS × 1 PDB code: 2rkm(A).
		19. Ligand: LYS-LYS-LYS × 1 PDB code: 2olb(A).
		20. Ligand: LYS-LYS-LYS-ALA × 1 PDB code: 1olc(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 3 acetic acid Acetate ion PDB codes: 1b46(A), 1qkb(A), 2olb(A).
Ium		2. Metal: IUM × 15 PDB codes: 1b1h(A), 1b32(A), 1b3f(A), 1b3g(A), 1b40(A), 1b46(A), 1b4z(A), 1b51(A), 1b58(A), 1b9j(A), 1jet(A), 1jeu(A), 1jev(A), 1qka(A), 1qkb(A).
_U1		3. Metal: _U1 × 9 PDB codes: 1b05(A), 1b0h(A), 1b2h(A), 1b3h(A), 1b4h(A), 1b5h(A), 1b5i(A), 1b5j(A), 1b6h(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 acetic acid Acetate ion PDB code: 1qkb(A).
Ium		2. Metal: IUM × 13 PDB codes: 1b1h(A), 1b32(A), 1b3f(A), 1b3g(A), 1b40(A), 1b46(A), 1b4z(A), 1b51(A), 1b58(A), 1b9j(A), 1jet(A), 1qka(A), 1qkb(A).
_U1		3. Metal: _U1 × 9 PDB codes: 1b05(A), 1b0h(A), 1b2h(A), 1b3h(A), 1b4h(A), 1b5h(A), 1b5i(A), 1b5j(A), 1b6h(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 acetic acid Acetate ion PDB code: 2olb(A).
Ium		2. Metal: IUM × 15 PDB codes: 1b1h(A), 1b32(A), 1b3f(A), 1b3g(A), 1b40(A), 1b46(A), 1b4z(A), 1b51(A), 1b58(A), 1b9j(A), 1jet(A), 1jeu(A), 1jev(A), 1qka(A), 1qkb(A).
_U1		3. Metal: _U1 × 9 PDB codes: 1b05(A), 1b0h(A), 1b2h(A), 1b3h(A), 1b4h(A), 1b5h(A), 1b5i(A), 1b5j(A), 1b6h(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 acetic acid Acetate ion PDB code: 1b32(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 8 acetic acid Acetate ion PDB codes: 1b32(A), 1b46(A), 1b4z(A), 1qkb(A), 2olb(A).