Ligand clusters for UniProt code P04746

Ligand clusters for P04746: Pancreatic alpha-amylase from Homo sapiens

		Top 6 (of 16) ligand clusters Cluster 1. 31 ligand types 49 ligands Cluster 2. 3 ligand types 5 ligands Cluster 3. 5 ligand types 6 ligands Cluster 4. 4 ligand types 6 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1bsiA

Structures

PDB		Schematic diagram
1bsiA
2qmkA
3ij9A
3ij8A
3ij7A
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Cluster 1 contains 31 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: LAG × 1 Maltosyl-Alpha (1,4)-(Z,3s,4s,5r,6r)-3,4,5-Trihydroxy- 6-Hydroxymethyl-Piperidin-2-One oxime PDB code: 1u30(A).
		2. Ligand: LM2 × 1 4'-O-Methyl-Maltosyl-Alpha (1,4)-(Z, 3s,4s,5r,6r)-3,4, 5-Trihydroxy-6-Hydroxymethyl-Piperidin-2-One PDB code: 1u33(A).
		3. Ligand: HMC × 1 5-Hydroxymethyl-Chonduritol PDB code: 1cpu(A).
		4. Ligand: ARE × 2 Acarbose derived pentasaccharide PDB codes: 1xd0(A), 1xh2(A).
		5. Ligand: GOX × 2 (2s,3s,4r,5r)-6-(Hydroxyamino)-2-(Hydroxymethyl)-2,3,4, 5-Tetrahydropyridine-3,4,5-Triol PDB codes: 1u2y(A), 1u30(A).
		6. Ligand: 6SA × 1 Acarbose derived hexasaccharide PDB code: 1xd1(A).
		7. Ligand: AAO × 1 Acarbose derived hexasaccharide PDB code: 1xh0(A).
		8. Ligand: GLC-GLC × 5 GLC=Alpha-D-Glucopyranose. PDB codes: 1cpu(A), 3cpu(A), 3old(A), 6z8l(A),
		9. Ligand: ARE × 2 Acarbose derived pentasaccharide PDB codes: 3baj(A), 3bay(A).
		10. Ligand: HSD × 4 (1s,2s,3r,6r)-6-Amino-4-(Hydroxymethyl)cyclohex-4-Ene- 1,2,3-Triol PDB codes: 3olg(A), 3oli(A),
		11. Ligand: ACI × 3 6-Amino-4-Hydroxymethyl-Cyclohex-4-Ene-1,2,3-Triol PDB codes: 3old(A), 3ole(A),
		12. Ligand: GLC-G6D × 3 GLC=Alpha-D-Glucopyranose, G6D=Alpha-D-Quinovopyranose. PDB codes: 3ole(A), 3olg(A), 3oli(A).
		13. Ligand: GLC-GLC-G6D × 3 GLC=Alpha-D-Glucopyranose, G6D=Alpha-D-Quinovopyranose. PDB codes: 3old(A), 3ole(A), 3oli(A).
		14. Ligand: MPD × 3 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 3old(A), 3ole(A), 6obx(A).
		15. Ligand: 3L9 × 1 Montbretin a PDB code: 4w93(A).
		16. Ligand: 5J7 × 1 5,7-Dihydroxy-4-Oxo-2-(3,4,5-Trihydroxyphenyl)-4h- Chromen-3-Yl 6-Deoxy-2-O-{6-O-[(2e)-3-(3,4- Dihydroxyphenyl)prop-2-Enoyl]-Beta-D-Glucopyranosyl}- Alpha-L-Mannopyranoside PDB code: 5e0f(A).
		17. Ligand: 5QP × 1 (1r,2r,3s,5r,6s)-2,3,5-Trihydroxy-6-(Hydroxymethyl) cyclohexyl alpha-D-Glucopyranoside PDB code: 5emy(A).
		18. Ligand: B0D × 1 (2r,3s,4r,5r,6r)-2,6-Difluoro-2-(Hydroxymethyl) tetrahydro-2h-Pyran-3,4,5-Triol PDB code: 3ij8(A).
		19. Ligand: B9D × 1 5-Fluoro-Alpha-L-Idopyranose PDB code: 3ij8(A).
		20. Ligand: B9D-BGC × 1 B9D=5-Fluoro-Alpha-L-Idopyranose, BGC=Beta-D-Glucopyranose. PDB code: 3ij9(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GLC-GLC-GLC × 3 GLC=Alpha-D-Glucopyranose. PDB codes: 3old(A), 3ole(A), 3oli(A).
		2. Ligand: BGC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose. PDB code: 3olg(A).
		3. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 5td4(A).

Cluster 3 contains 5 ligand types

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 3olg(A).
		2. Ligand: BGC-GLC-GLC × 2 GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose. PDB codes: 3old(A), 3ole(A).
		3. Ligand: BGC × 1 Beta-D-Glucopyranose PDB code: 3oli(A).
		4. Ligand: GLF-B8D × 1 B8D=4-O-Methyl-Alpha-D-Glucopyranose, GLF=Alpha-D-Glucopyranosyl fluoride. PDB code: 3ij7(A).
		5. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 3oli(A).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 6z8l(A).
		2. Ligand: B0D × 2 (2r,3s,4r,5r,6r)-2,6-Difluoro-2-(Hydroxymethyl) tetrahydro-2h-Pyran-3,4,5-Triol PDB codes: 3ij8(A), 3ij9(A).
		3. Ligand: GLC-GLC × 2 GLC=Alpha-D-Glucopyranose. PDB codes: 3oli(A), 5td4(A).
		4. Ligand: BGC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose. PDB code: 3olg(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 6z8l(A).
		2. Ligand: GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 5td4(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-GLC-GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 5td4(A).