Ligand clusters for UniProt code P03420

Ligand clusters for P03420: Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain A2)

		Top 6 (of 36) ligand clusters Cluster 1. 8 ligand types 43 ligands Cluster 2. 3 ligand types 5 ligands Cluster 3. 3 ligand types 12 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 2 ligand types 29 ligands Cluster 6. 2 ligand types 17 ligands
Representative protein: 5tojA

Structures

PDB		Schematic diagram
5tojA
5k6cF
5k6iF
5ea4F
5tokA
		more ...

Cluster 1 contains 8 ligand types

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Ligand		Description
		1. Ligand: SO4 × 25 Sulfate ion PDB codes: 4mms(B), 4mmu(B), 5c69(A), 5c6b(F), 5ea3(F), 5ea4(F), 5ea7(F), 5ea8(F), 5k6b(F), 6eae(F), 6eaf(A), 6eag(F), 6eah(A), 6eai(A), 6eaj(F), 6eak(F), 6eam(F), 6ean(F).
		2. Ligand: NHE × 7 2-[N-Cyclohexylamino]ethane sulfonic acid PDB codes: 5c69(A), 6eae(F), 6eaf(A), 6eai(A), 6eam(F), 6ean(F).
		3. Ligand: 5NK × 3 2-[[2-[[1-(2-Azanylethyl)piperidin-4-Yl]amino]-4- Methyl-Benzimidazol-1-Yl]methyl]-6-Methyl- Pyridin-3-Ol PDB codes: 5ea3(F), 6eag(F), 6eak(F).
		4. Ligand: TAR × 3 D(-)-Tartaric acid PDB codes: 5ea5(F), 6eal(F),
		5. Ligand: TM3 × 2 2-[[6-[[[2-(3-Hydroxypropyl)-5- Methylphenyl]amino]methyl]-2-[[3-(4-Morpholinyl) propyl]amino]-1h- Benzimidazol-1-Yl]methyl]-6-Methyl-3- Pyridinol PDB codes: 3kpe(B), 5ea5(F).
		6. Ligand: 5NM × 1 3-[[5-Bromanyl-1-(3-Methylsulfonylpropyl)benzimidazol- 2-Yl]methyl]-1-Cyclopropyl-Imidazo[4,5- C]pyridin-2-One PDB code: 5ea4(F).
		7. Ligand: 5NO × 1 1-Cyclopropyl-3-[[1-(4-Oxidanylbutyl)benzimidazol-2- Yl]methyl]imidazo[4,5-C]pyridin-2-One PDB code: 5ea7(F).
		8. Ligand: 5NP × 1 (9~{b}~{r})-9~{b}-(4-Chlorophenyl)-1-Pyridin-3- Ylcarbonyl-2,3-Dihydroimidazo[5,6]pyrrolo[1,2- ~{A}]pyridin-5-One PDB code: 5ea6(F).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 5k6i(F), 6cxc(A), 6dc5(A).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 3rki(A).
		3. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 5udc(F).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 5 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3rki(A), 5k6b(F), 5k6i(F), 6dc3(F), 6ead(F).
		2. Ligand: NAG-NAG-BMA-MAN × 5 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6ous(E),
		3. Ligand: PO4 × 2 Phosphate ion PDB codes: 4mmu(A),

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 6apb(A), 6cxc(B).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 3rki(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 10 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4mmu(B), 5toj(A), 5tok(A), 6dc3(F), 6ead(F), 6eaf(A), 6eai(A), 6eam(F), 6ean(F), 6ous(B).
		2. Ligand: NHE × 19 2-[N-Cyclohexylamino]ethane sulfonic acid PDB codes: 5c69(A), 5c6b(F), 5ea3(F), 5ea4(F), 5ea5(F), 5ea6(F), 5ea7(F), 5ea8(F), 6ead(F), 6eae(F), 6eaf(A), 6eag(F), 6eah(A), 6eai(A), 6eaj(F), 6eak(F), 6eal(F), 6eam(F), 6ean(F).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 16 Sulfate ion PDB codes: 4mmq(B), 4mms(B), 4mmu(B), 5c69(A), 5c6b(F), 5ea3(F), 5ea4(F), 5ea6(F), 5ea8(F), 6eae(F), 6eaf(A), 6eah(A), 6eai(A), 6eaj(F), 6eak(F), 6ean(F).
		2. Ligand: TAR × 1 D(-)-Tartaric acid PDB code: 6eam(F).