Ligand clusters for UniProt code P02872

Ligand clusters for P02872: Galactose-binding lectin from Arachis hypogaea

		4 ligand clusters Cluster 1. 14 ligand types 29 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 3 ligands Cluster 4. 2 ligand types 56 ligands
Representative protein: 1bzwA

Structures

PDB		Schematic diagram
1bzwA
6vgfA
2dvfA
1v6kA
1v6lA
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: SFP × 8 5,10,15,20-Tetrakis(4-Sulpfonatophenyl)-21h,23h- Porphine PDB codes: 1rir(A), 1rit(A),
		2. Ligand: GLC-GAL × 7 GLC=Alpha-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB codes: 1bzw(A), 1cr7(A), 1v6i(A), 1v6j(A), 1v6k(A), 1v6l(A), 2pel(A).
		3. Ligand: GAL-GAL × 2 GAL=Beta-D-Galactopyranose. PDB codes: 2dv9(A), 2dvd(A).
		4. Ligand: NGA-GAL × 2 NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, GAL=Beta-D-Galactopyranose. PDB codes: 2dvb(A), 2tep(A).
		5. Ligand: GLA × 1 Alpha-D-Galactopyranose PDB code: 2dvg(A).
		6. Ligand: MBG × 1 Methyl beta-D-Galactopyranoside PDB code: 1qf3(A).
		7. Ligand: MGC-GAL × 1 MGC=Methyl 2-Acetamido-2-Deoxy-Alpha-D-Galactopyranoside, GAL=Beta-D-Galactopyranose. PDB code: 2dva(A).
		8. Ligand: NDG-GAL × 1 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 1ciw(A).
		9. Ligand: QSG × 1 (2r,3r)-N-[(1-{(3s,3ar,6s,6ar)-6-[4-({[(2r,3r)-2,3- Dihydroxy-4-Oxo-4-{[(2r,3r,4r,5r,6r)-3,4,5- Trihydroxy- 6-(Hydroxymethyl)tetrahydro-2h-Pyran-2- Yl]amino}butanoyl]amino}methyl)-1h-1,2,3- Triazol-1- Yl]hexahydrofuro[3,2-B]furan-3-Yl}-1h-1,2,3-Triazol-4- Yl)methyl]-2,3-Dihydroxy-N'- [(2r,3r,4s,5r,6r)-3,4,5- Trihydroxy-6-(Hydroxymethyl)tetrahydro-2h-Pyran-2- Yl]butanediamide (non- Preferred name) PDB code: 6v95(A).
		10. Ligand: QTY × 1 N-[[1-[(3s,3ar,6s,6ar)-6-[4-[[[4-[[(2r,3r,4s,5r,6r)-6- (Hydroxymethyl)-3,4,5-Tris(oxidanyl)oxan-2- Yl]amino]- 4-Oxidanylidene-Butanoyl]amino]methyl]-1,2,3-Triazol- 1-Yl]-2,3,3a,5,6,6a- Hexahydrofuro[3,2-B]furan-3-Yl]-1, 2,3-Triazol-4-Yl]methyl]-N'-[(2r,3r,4s,5r,6r)-6- (Hydroxymethyl)-3,4,5-Tris(oxidanyl)oxan-2- Yl]butanediamide PDB code: 6vav(A).
		11. Ligand: QWG × 1 (2r,3r,4s,5r,6s)-2-(Hydroxymethyl)-6-{[(2s,3r,4s,5s, 6s)-3,4,5-Trihydroxy-6-({[(1- {[(2r,3s,4s,5r,6s)-3,4,5- Trihydroxy-6-Methoxytetrahydro-2h-Pyran-2-Yl]methyl}- 1h-1,2,3-Triazol- 4-Yl)methyl]sulfanyl}methyl) tetrahydro-2h-Pyran-2-Yl]sulfanyl}tetrahydro-2h-Pyran- 3,4,5- Triol (non-Preferred name) PDB code: 6vc4(A).
		12. Ligand: QWJ × 1 6-S-(Prop-2-Yn-1-Yl)-6-Thio-Beta-D-Glucopyranosyl 1- Thio-Beta-D-Galactopyranoside PDB code: 6vc3(A).
		13. Ligand: S3W × 1 N-[(2r,3r,4s,5r,6s)-3,4,5-Trihydroxy-6-(Hydroxymethyl) tetrahydro-2h-Pyran-2-Yl]-N'-[(1- {[(2r,3s,4s,5r,6s)-3, 4,5-Trihydroxy-6-Methoxytetrahydro-2h-Pyran-2- Yl]methyl}-1h-1,2,3-Triazol- 4-Yl)methyl]butanediamide PDB code: 6vaw(A).
		14. Ligand: WA3 × 1 (2s,3r,4s,5r,6s)-2-(Hydroxymethyl)-6-{[(2s,3r,4s,5s, 6s)-3,4,5-Trihydroxy-6-({[(1- {[(2r,3s,4s,5r,6r)-3,4,5- Trihydroxy-6-{[(2r,3r,4s,5s,6r)-3,4,5-Trihydroxy-6- ({4- [({[(2s,3s,4s,5r,6s)-3,4,5-Trihydroxy-6-{[(2s,3r, 4s,5r,6r)-3,4,5-Trihydroxy-6- (Hydroxymethyl) tetrahydro-2h-Pyran-2-Yl]sulfanyl}tetrahydro-2h-Pyran- 2- Yl]methyl}sulfanyl)methyl]-1h-1,2,3-Triazol-1- Yl}methyl)tetrahydro-2h-Pyran-2-Yl]oxy}tetrahydro- 2h- Pyran-2-Yl]methyl}-1h-1,2,3-Triazol-4-Yl) methyl]sulfanyl}methyl)tetrahydro-2h-Pyran-2- Yl]sulfanyl}tetrahydro-2h-Pyran-3,4,5-Triol PDB code: 6vgf(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 2dva(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 2dvb(A), 2dvd(A), 2dvf(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 28 PDB codes: 1bzw(A), 1ciw(A), 1cq9(A), 1cr7(A), 1qf3(A), 1rir(A), 1rit(A), 1v6i(A), 1v6j(A), 1v6k(A), 1v6l(A), 1v6m(A), 1v6n(A), 1v6o(A), 2dv9(A), 2dva(A), 2dvb(A), 2dvd(A), 2dvf(A), 2dvg(A), 2pel(A), 2tep(A), 6v95(A), 6vav(A), 6vaw(A), 6vc3(A), 6vc4(A), 6vgf(A).
_Ca		2. Metal: _CA × 28 PDB codes: 1bzw(A), 1ciw(A), 1cq9(A), 1cr7(A), 1qf3(A), 1rir(A), 1rit(A), 1v6i(A), 1v6j(A), 1v6k(A), 1v6l(A), 1v6m(A), 1v6n(A), 1v6o(A), 2dv9(A), 2dva(A), 2dvb(A), 2dvd(A), 2dvf(A), 2dvg(A), 2pel(A), 2tep(A), 6v95(A), 6vav(A), 6vaw(A), 6vc3(A), 6vc4(A), 6vgf(A).