Ligand clusters for UniProt code P02753

Ligand clusters for P02753: Retinol-binding protein 4 OS=Homo sapiens OX=9606 GN=RBP4 PE=1 SV=3

		Top 6 (of 25) ligand clusters Cluster 1. 10 ligand types 27 ligands Cluster 2. 5 ligand types 9 ligands Cluster 3. 3 ligand types 4 ligands Cluster 4. 3 ligand types 7 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 1qabE

Structures

PDB		Schematic diagram
1qabE
3bszE
3fmzA
5nu8A
5nu2A
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 1jyd(A), 1jyj(A),
		2. Ligand: RTL × 6 vitamin a Retinol PDB codes: 1brp(A), 1qab(E), 1rbp(A), 3bsz(E), 5nu7(A).
		3. Ligand: PLM × 5 palmitic acid Palmitic acid PDB codes: 5nty(A), 5nu2(A), 5nu6(A), 5nu8(A), 5nu9(A).
		4. Ligand: DAO × 2 lauric acid Lauric acid PDB codes: 5nua(A), 5nub(A).
		5. Ligand: REA × 1 tretinoin Retinoic acid PDB code: 1rlb(E).
		6. Ligand: 2T1 × 2 2-[({4-[2-(Trifluoromethyl)phenyl]piperidin-1- Yl}carbonyl)amino]benzoic acid PDB codes: 3fmz(A), 6qba(A).
		7. Ligand: OLA × 2 Oleic acid PDB codes: 2wq9(A), 2wqa(E).
		8. Ligand: 2RY × 1 1-[4-(7-Thia-9,11-Diazatricyclo[6.4.0.0^{2,6}]dodeca- 1(12),2(6),8,10-Tetraen-12-Yl)piperazin-1- Yl]-2-[2- (Trifluoromethyl)phenyl]ethanone PDB code: 4o9s(A).
		9. Ligand: 2WL × 1 (1-Benzyl-1h-Imidazol-4-Yl)[4-(2-Chlorophenyl) piperazin-1-Yl]methanone PDB code: 4psq(B).
		10. Ligand: ODT × 1 (11e,13e,15z)-Octadeca-11,13,15-Trienoic acid PDB code: 2wr6(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2wq9(A).
		2. Ligand: EDO × 4 1,2-Ethanediol PDB codes: 4o9s(A), 4psq(B),
		3. Ligand: IMD × 2 Imidazole PDB codes: 6qba(A),
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 2wqa(E).
_Zn		5. Metal: _ZN × 1 PDB code: 6qba(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1jyd(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4psq(B),
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4o9s(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
_Cl		1. Metal: _CL × 4 PDB codes: 5nty(A), 5nu2(A), 5nu7(A), 5nu8(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4o9s(A), 4psq(B).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6qba(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1jyj(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4o9s(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2wq9(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4o9s(A).