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Ligand clusters for UniProt code P01008

Ligand clusters for P01008: Antithrombin-III OS=Homo sapiens GN=SERPINC1 PE=1 SV=1

Top 6 (of 15) ligand clusters
Cluster 1.
4 ligand types
10 ligands
 Cluster 2.
11 ligand types
50 ligands
 Cluster 3.
6 ligand types
18 ligands
 Cluster 4.
1 ligand type
1 ligand
 Cluster 5.
1 ligand type
2 ligands
 Cluster 6.
1 ligand type
1 ligand
Representative protein: 1dzgI  
JSmol
 

Structures

PDB   Schematic diagram
1dzgI    
3kcgI    
4eb1I    
1sr5A    
2gd4I    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: NTP × 4
Heparin pentasaccharide
PDB codes: 1azx(I), 1e03(I), 1nq9(I), 3kcg(I).


 
2. Ligand: NTO × 3
Trisulfoamino heparin pentasaccharide
PDB codes: 2gd4(I), 3evj(I),


 
3. Ligand: GU4-GU6-GU0-GU5-GU8-GU9-GU8-GU9-GU8-GU9-GU8-GU5-GU1-GU6-GU2-GU3 × 2
GU4=2,3,4,6-Tetra-O-Sulfonato-Alpha-D-Glucopyranose, GU6=2,3,6-Tri-O-Sulfonato-Alpha-D-Glucopyranose, GU0=2,3,6-Tri-O-Sulfonato-Alpha-L-Galactopyranose, GU5=2,3-Di-O-Methyl-6-O-Sulfonato-Alpha-D-Glucopyranose, GU8=2,3,6-Tri-O-Methyl-Beta-D-Glucopyranose, GU9=2,3,6-Tri-O-Methyl-Alpha-D-Glucopyranose, GU1=2,3-Di-O-Methyl-Beta-D-Glucopyranuronic acid, GU2=2,3-Di-O-Methyl-Alpha-L-Idopyranuronic acid, GU3=Methyl 3-O-Methyl-2,6-Di-O-Sulfo-Alpha-D- Glucopyranoside.
PDB codes: 1tb6(I), 2b5t(I).


 
4. Ligand: NT1 × 1
Heparin heptasaccharide
PDB code: 1sr5(A).

 

 Cluster 2 contains 11 ligand types

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Ligand Description


 
1. Ligand: NAG × 15
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1azx(I), 1dzg(I), 1dzh(I), 1nq9(I), 1oyh(I), 1r1l(L), 1sr5(A), 2b4x(I), 2b5t(I), 2gd4(I), 2hij(I), 3evj(I), 4eb1(I).


 
2. Ligand: NAG-NAG × 13
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1dzg(I), 1dzh(I), 1e03(I), 1e04(I), 1e05(I), 1nq9(I), 1oyh(I), 1t1f(A), 2b4x(I), 2znh(A), 3evj(L), 4eb1(I).


 
3. Ligand: NDG × 7
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB codes: 1jvq(L), 1lk6(L), 1tb6(I).


 
4. Ligand: NAG-NAG-MAN × 5
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB codes: 2beh(I), 2hij(I), 2znh(A), 3evj(I), 3kcg(I).


 
5. Ligand: NAG-NAG-BMA × 3
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 1e03(I), 1e05(I), 1t1f(A).


 
6. Ligand: NAA × 2
N-Acetyl-D-Allosamine
PDB codes: 2ant(L),


 
7. Ligand: NAG-FUC × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 3kcg(I).


 
8. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 1tb6(I).


 
9. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 2gd4(I).


 
10. Ligand: NDG-FUC-NAG-BMA-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 2b5t(I).


 
11. Ligand: NDG-NAG × 1
NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, NAG=N-Acetyl-D-Glucosamine.
PDB code: 2beh(I).

 

 Cluster 3 contains 6 ligand types

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Ligand Description


 
1. Ligand: NAG × 9
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1dzg(I), 1dzh(I), 1e05(I), 1oyh(I), 2b4x(I), 2beh(I), 2gd4(I), 2znh(A), 4eb1(I).


 
2. Ligand: NAG-NAG × 4
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1t1f(A), 2b5t(I), 2hij(I), 3evj(I).


 
3. Ligand: NAG-NAG-BMA × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 1e04(I), 1tb6(I).


 
4. Ligand: NAG-FUC × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 3kcg(I).


 
5. Ligand: NAG-NAG-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 3evj(L).


 
6. Ligand: NDG × 1
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB code: 1jvq(L).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG-NAG-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 2znh(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 2
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1e03(I), 1sr5(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 1
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB code: 1e05(I).

 

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