Ligand clusters for UniProt code P00366

Ligand clusters for P00366: Glutamate dehydrogenase 1, mitochondrial OS=Bos taurus GN=GLUD1 PE=1 SV=2

		Top 6 (of 11) ligand clusters Cluster 1. 7 ligand types 29 ligands Cluster 2. 4 ligand types 12 ligands Cluster 3. 4 ligand types 12 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 4 ligand types 18 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 1hwyA

Structures

PDB		Schematic diagram
1hwyA
3jd0A
3jd2A
3jd1A
3jd3A
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
		1. Ligand: GLU × 1 PDB code: 1hwz(A).
		2. Ligand: NDP × 1 Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate PDB code: 1hwz(A).
		3. Ligand: AKG × 1 2-Oxoglutaric acid PDB code: 1hwy(A).
		4. Ligand: NAD × 1 Nicotinamide-Adenine-Dinucleotide PDB code: 1hwy(A).
		5. Ligand: NAI × 7 nadh 1,4-Dihydronicotinamide adenine dinucleotide PDB codes: 3jd1(A), 3jd2(A), 3jd3(A), 3jd4(A), 3mw9(A), 6dhd(A), 6dhn(A).
		6. Ligand: GLU × 10 PDB codes: 3etd(A), 3ete(A), 3etg(A), 3mvo(A), 3mvq(A), 3mw9(A), 6dhd(A), 6dhm(A), 6dhn(A), 6dhq(A).
		7. Ligand: NDP × 8 Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate PDB codes: 3etd(A), 3ete(A), 3etg(A), 3mvo(A), 3mvq(A), 3qmu(A), 6dhm(A), 6dhq(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAD × 1 Nicotinamide-Adenine-Dinucleotide PDB code: 1hwy(A).
		2. Ligand: NAI × 7 nadh 1,4-Dihydronicotinamide adenine dinucleotide PDB codes: 3jd1(A), 3jd2(A), 3jd3(A), 3jd4(A), 3mw9(A), 6dhd(A), 6dhn(A).
		3. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 1nqt(A), 6dhk(A).
		4. Ligand: XEG × 2 (2r,3s)-2-(3,4-Dihydroxyphenyl)-5,7-Dihydroxy-3,4- Dihydro-2h-Chromen-3-Yl 3,4,5-Trihydroxybenzoate PDB codes: 3qmu(A), 6dhl(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAD × 1 Nicotinamide-Adenine-Dinucleotide PDB code: 1hwy(A).
		2. Ligand: NAI × 7 nadh 1,4-Dihydronicotinamide adenine dinucleotide PDB codes: 3jd1(A), 3jd2(A), 3jd3(A), 3jd4(A), 3mw9(A), 6dhd(A), 6dhn(A).
		3. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 1nqt(A), 6dhk(A).
		4. Ligand: XEG × 2 (2r,3s)-2-(3,4-Dihydroxyphenyl)-5,7-Dihydroxy-3,4- Dihydro-2h-Chromen-3-Yl 3,4,5-Trihydroxybenzoate PDB codes: 3qmu(A), 6dhl(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: B1T × 2 bithionol 2,2'-Sulfanediylbis(4,6-Dichlorophenol) PDB codes: 3etd(A),
		2. Ligand: GWD × 1 (3e)-3-[(3,5-Dibromo-4-Hydroxyphenyl)methylidene]-5- Iodo-1,3-Dihydro-2h-Indol-2-One PDB code: 3etg(A).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: GTP × 1 Guanosine-5'-Triphosphate PDB code: 1hwz(A).
		2. Ligand: PO4 × 3 Phosphate ion PDB codes: 1hwy(A),
		3. Ligand: GTP × 12 Guanosine-5'-Triphosphate PDB codes: 3etd(A), 3ete(A), 3etg(A), 3jd0(A), 3jd3(A), 3jd4(A), 3mvq(A), 3mw9(A), 6dhd(A), 6dhm(A), 6dhn(A), 6dhq(A).
_Zn		4. Metal: _ZN × 2 PDB codes: 3mvq(A), 6dhm(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: H3P × 2 hexachlorophene 2,2'-Methanediylbis(3,4,6-Trichlorophenol) PDB codes: 3ete(A),