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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P00183

Ligand clusters for P00183: Camphor 5-monooxygenase from Pseudomonas putida

Top 6 (of 29) ligand clusters
Cluster 1.
49 ligand types
228 ligands
 Cluster 2.
2 ligand types
2 ligands
 Cluster 3.
2 ligand types
2 ligands
 Cluster 4.
1 ligand type
1 ligand
 Cluster 5.
1 ligand type
2 ligands
 Cluster 6.
3 ligand types
4 ligands
Representative protein: 4kkyX  
JSmol
 

Structures

PDB   Schematic diagram
4kkyX    
1akdA    
2l8mA    
3cp4A    
1dz6A    
 more ...

 

 Cluster 1 contains 49 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: CAM × 67
camphor
Camphor
PDB codes: 1akd(A), 1dz4(A), 1dz6(A), 1dz8(A), 1geb(A), 1iwi(A), 1iwj(A), 1o76(A), 1t85(A), 1t86(A), 1t87(A), 1t88(A), 1uyu(A), 1yrc(A), 1yrd(A), 2a1m(A), 2a1n(A), 2a1o(A), 2cp4(A), 2cpp(A), 2feu(A), 2l8m(A), 2m56(A), 2qbl(A), 2qbm(A), 2qbn(A), 2qbo(A), 2z97(A), 2zaw(A), 2zax(A), 2zuh(A), 2zui(A), 2zuj(A), 2zwt(A), 2zwu(A), 3cpp(A), 3fwf(A), 3fwg(A), 3fwi(A), 3fwj(A), 3l63(A), 3wrh(A), 3wri(A), 3wrj(A), 3wrk(A), 3wrl(A), 3wrm(A), 4cp4(A), 4ek1(A), 4g3r(A), 4jx1(A), 4kky(X), 4l49(A), 4l4a(A), 4l4b(A), 4l4c(A), 4l4d(A), 4l4e(A), 4l4f(A), 4l4g(A), 5cp4(A), 5ik1(A), 5wk9(A), 6cp4(A), 6nbl(A), 6we6(A).


 
2. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3w9c(A).


 
3. Ligand: NCT × 1
nicotine
(S)-3-(1-Methylpyrrolidin-2-Yl)pyridine
PDB code: 1p7r(A).


 
4. Ligand: CAE × 1
Camphane
PDB code: 6cpp(A).


 
5. Ligand: TMH × 1
(+)-Alpha-Pinene
PDB code: 1mpw(A).


 
6. Ligand: ADO × 1
Adamantanone
PDB code: 5cpp(A).


 
7. Ligand: TCM × 1
Thiocamphor
PDB code: 8cpp(A).


 
8. Ligand: ADM × 2
Adamantane
PDB codes: 3cp4(A), 4cpp(A).


 
9. Ligand: NCM × 1
Norcamphor
PDB code: 7cpp(A).


 
10. Ligand: DBR × 1
Adamantane-1-Carboxylic acid-5-Dimethylamino- Naphthalene-1-Sulfonylamino-Butyl-Amide
PDB code: 1rf9(A).


 
11. Ligand: DSO × 2
Adamantane-1-Carboxylic acid-5-Dimethylamino- Naphthalene-1-Sulfonylamino-Octyl-Amide
PDB codes: 1lwl(A), 1re9(A).


 
12. Ligand: ACT × 1
Acetate ion
PDB code: 1qmq(A).


 
13. Ligand: FEM × 1
N-(2-Ferrocenylethyl)maleimide
PDB code: 1gjm(A).


 
14. Ligand: DRB × 2
Delta-Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-Bipyridine)- C9-Adamantane ruthenium (ii)
PDB codes: 1qmq(A),


 
15. Ligand: RFA × 1
Delta-Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-Bipyridine)- C2-Adamantane ruthenium (ii)
PDB code: 1k2o(A).


 
16. Ligand: RFB × 1
Lambda-Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-Bipyridine)- C2-Adamantane ruthenium (ii)
PDB code: 1k2o(A).


 
17. Ligand: 6HE × 1
6-Methy-6-Depropionatehemin
PDB code: 2zaw(A).


 
18. Ligand: HEM × 45
Protoporphyrin IX containing fe
PDB codes: 1akd(A), 1c8j(A), 1cp4(A), 1dz4(A), 1dz6(A), 1geb(A), 1gjm(A), 1iwi(A), 1iwj(A), 1iwk(A), 1j51(A), 1k2o(A), 1lwl(A), 1mpw(A), 1p7r(A), 1phc(A), 1qmq(A), 1re9(A), 1rf9(A), 1t86(A), 1t87(A), 1t88(A), 1uyu(A), 1yrc(A), 1yrd(A), 2cp4(A), 2cpp(A), 2frz(A), 2gqx(A), 2gr6(A), 2h7s(A), 2qbl(A), 2qbm(A), 2qbn(A), 2qbo(A), 2zax(A), 3cp4(A), 4cp4(A), 4cpp(A), 5cp4(A), 5cpp(A), 6cp4(A), 6cpp(A), 7cpp(A), 8cpp(A).


 
19. Ligand: MNR × 2
Protoporphyrin IX containing mn
PDB codes: 2fe6(A), 2feu(A).


 
20. Ligand: HEM × 50
Protoporphyrin IX containing fe
PDB codes: 2m56(A), 2zuh(A), 2zui(A), 2zuj(A), 2zwt(A), 2zwu(A), 3fwf(A), 3fwg(A), 3fwi(A), 3fwj(A), 3l61(A), 3l62(A), 3l63(A), 3oia(A), 3ol5(A), 3p6m(A), 3p6n(A), 3p6o(A), 3p6p(A), 3p6q(A), 3p6r(A), 3p6s(A), 3p6t(A), 3p6u(A), 3p6v(A), 3p6w(A), 3p6x(A), 3w9c(A), 3wrh(A), 3wri(A), 3wrj(A), 3wrk(A), 3wrl(A), 3wrm(A), 4ek1(A), 4g3r(A), 4jws(A), 4jwu(A), 4jx1(A), 4kky(X), 4l49(A), 4l4a(A), 4l4b(A), 4l4c(A), 5gxg(A), 5ik1(A), 5wk7(A), 6nbl(A), 6we6(A), 6wfl(A).

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 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5cp4(A).


 
2. Ligand: FEM × 1
N-(2-Ferrocenylethyl)maleimide
PDB code: 1gjm(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 1qmq(A).


 
2. Ligand: 1T4 × 1
N-(Pyren-1-Yl)acetamide
PDB code: 4kky(X).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: 1N0 × 1
1,1'-Hexane-1,6-Diyldipyrrolidine-2,5-Dione
PDB code: 4jws(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: 1N0 × 2
1,1'-Hexane-1,6-Diyldipyrrolidine-2,5-Dione
PDB codes: 4jwu(A), 6nbl(A).

 

 Cluster 6 contains 3 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5cp4(A).


 
2. Ligand: ACT × 1
Acetate ion
PDB code: 1qmq(A).


 
3. Ligand: SO4 × 2
Sulfate ion
PDB codes: 3w9c(A), 5gxg(A).

 

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