Ligand clusters for UniProt code O93430

Ligand clusters for O93430: Glycine receptor subunit alphaZ1 from Danio rerio

		Top 6 (of 9) ligand clusters Cluster 1. 3 ligand types 14 ligands Cluster 2. 3 ligand types 26 ligands Cluster 3. 2 ligand types 11 ligands Cluster 4. 2 ligand types 16 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 3 ligand types 24 ligands
Representative protein: 6ubsA

Structures

PDB		Schematic diagram
6ubsA
6vm3A
6vm2A
6vm0A
6plqA
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: IVM × 3 ivermectin (2ae,4e,5'S,6s,6'R,7s,8e,11r,13r,15s,17ar,20r,20ar, 20bs)-6'-[(2s)-Butan-2-Yl]-20,20b-Dihydroxy- 5',6,8,19- Tetramethyl-17 -Oxo-3',4',5',6,6',10,11,14,15,17,17a, 20,20a,20b-Tetradecahydro-2h,7h- Spiro[11,15- Methanofuro[4,3,2-Pq][2,6]benzodioxacy clooctadecine- 13,2'-Pyran]-7-Yl 2,6-Dideoxy- 4-O-(2,6-Dideoxy-3-O- Methyl-Alpha-L-Arabino-Hexopyranosyl)-3-O-Methyl- Alpha-L-Arabino- Hexopyranoside PDB codes: 6vm0(A), 6vm2(A), 6vm3(A).
		2. Ligand: UNL × 9 Unknown ligand PDB codes: 6plr(A), 6pls(A), 6plt(A), 6plu(A), 6plv(A),
		3. Ligand: PX4 × 2 1,2-Dimyristoyl-Sn-Glycero-3-Phosphocholine PDB codes: 6ubs(A),

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 6ud3(A).
		2. Ligand: NAG-NAG-BMA × 13 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 6plo(A), 6plp(A), 6plq(A), 6plw(A), 6plx(A), 6ply(A), 6plz(A), 6pm0(A), 6pm1(A), 6pm2(A), 6pm4(A), 6pm5(A), 6pm6(A).
		3. Ligand: NAG-NAG × 12 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 6plr(A), 6pls(A), 6plt(A), 6plu(A), 6plv(A), 6pm3(A), 6pxd(E), 6ubs(A), 6ubt(A), 6vm0(A), 6vm2(A), 6vm3(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: IVM × 3 ivermectin (2ae,4e,5'S,6s,6'R,7s,8e,11r,13r,15s,17ar,20r,20ar, 20bs)-6'-[(2s)-Butan-2-Yl]-20,20b-Dihydroxy- 5',6,8,19- Tetramethyl-17 -Oxo-3',4',5',6,6',10,11,14,15,17,17a, 20,20a,20b-Tetradecahydro-2h,7h- Spiro[11,15- Methanofuro[4,3,2-Pq][2,6]benzodioxacy clooctadecine- 13,2'-Pyran]-7-Yl 2,6-Dideoxy- 4-O-(2,6-Dideoxy-3-O- Methyl-Alpha-L-Arabino-Hexopyranosyl)-3-O-Methyl- Alpha-L-Arabino- Hexopyranoside PDB codes: 6vm0(A), 6vm2(A), 6vm3(A).
		2. Ligand: UNL × 8 Unknown ligand PDB codes: 6plr(A), 6pls(A), 6plu(A), 6plv(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: UNL × 13 Unknown ligand PDB codes: 6plr(A), 6pls(A), 6plt(A), 6plu(A), 6plv(A),
		2. Ligand: PIO × 3 [(2r)-2-Octanoyloxy-3-[Oxidanyl-[(1r,2r,3s,4r,5r,6s)-2, 3,6-Tris(oxidanyl)-4,5-Diphosphonooxy- Cyclohexyl]oxy- Phosphoryl]oxy-Propyl] octanoate PDB codes: 6ubs(A), 6vm0(A), 6vm2(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: RI5 × 1 (1ar,2ar,3s,6r,6as,8as,8br,9r)-2a-Hydroxy-8b-Methyl-9- (Prop-1-En-2-Yl)hexahydro-3,6-Methano-1,5,7- Trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3h)- Dione PDB code: 6ud3(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ABU × 9 gamma-aminobutyric acid Gamma-Amino-Butanoic acid PDB codes: 6plo(A), 6plp(A), 6plq(A), 6plu(A), 6plv(A), 6plw(A), 6plx(A), 6ply(A), 6plz(A).
		2. Ligand: GLY × 9 glycine PDB codes: 6plr(A), 6pm4(A), 6pm5(A), 6pm6(A), 6ubt(A), 6ud3(A), 6vm0(A), 6vm2(A), 6vm3(A).
		3. Ligand: TAU × 6 taurine 2-Aminoethanesulfonic acid PDB codes: 6pls(A), 6plt(A), 6pm0(A), 6pm1(A), 6pm2(A), 6pm3(A).