Ligand clusters for UniProt code O67648

Ligand clusters for O67648: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Aquifex aeolicus (strain VF5) GN=lpxC PE=1 SV=1

		Top 6 (of 10) ligand clusters Cluster 1. 24 ligand types 78 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 3p3cA

Structures

PDB		Schematic diagram
3p3cA
1xxeA
2ierA
3p76A
1yh8A
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Cluster 1 contains 24 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: PLM × 3 palmitic acid Palmitic acid PDB codes: 2go3(A), 2ier(A), 2ies(A).
_Zn		2. Metal: _ZN × 35 PDB codes: 1p42(A), 1xxe(A), 1yh8(A), 1yhc(A), 2go3(A), 2go4(A), 2ier(A), 2j65(A), 2o3z(A), 3p3c(A), 3p76(A), 4oze(A), 4u3b(A), 4u3d(A), 5dro(A), 5drp(A), 5u86(A), 6ih0(A).
		3. Ligand: MYR × 5 Myristic acid PDB codes: 1p42(A), 2go3(A), 2j65(A),
		4. Ligand: IMD × 4 Imidazole PDB codes: 2go3(A), 4u3b(A), 4u3d(A).
		5. Ligand: PAM × 4 Palmitoleic acid PDB codes: 1yh8(A), 1yhc(A),
_Cl		6. Metal: _CL × 4 PDB codes: 1yhc(A), 2go4(A), 2j65(A), 4u3b(A).
		7. Ligand: AI7 × 2 3-(Heptyloxy)benzoic acid PDB codes: 2o3z(A),
		8. Ligand: PO4 × 2 Phosphate ion PDB codes: 5u86(A),
		9. Ligand: SO4 × 2 Sulfate ion PDB codes: 1yhc(A), 2o3z(A).
		10. Ligand: TUX × 2 1,5-Anhydro-2-C-(Carboxymethyl-N-Hydroxyamide)-2- Deoxy-3-O-Myristoyl-D-Glucitol PDB codes: 1xxe(A), 2go4(A).
		11. Ligand: UDP × 2 Uridine-5'-Diphosphate PDB codes: 2ier(A), 2j65(A).
		12. Ligand: 24G × 1 Uridine-5'-Diphosphate-3-O-(R-3-Hydroxymyristoyl)- Glucosamine PDB code: 4oze(A).
		13. Ligand: 3BW × 1 4-({[4-(4-Chlorophenoxy)phenyl]sulfanyl}methyl)-N- Hydroxytetrahydro-2h-Pyran-4-Carboxamide PDB code: 4u3b(A).
		14. Ligand: 3BX × 1 N-Hydroxy-4-[(4-{[4-(Morpholin-4-Ylmethyl) phenyl]ethynyl}phenoxy)methyl]tetrahydro-2h-Pyran-4- Carboxamide PDB code: 4u3d(A).
		15. Ligand: 3P3 × 1 N-[(1s,2r)-2-Hydroxy-1-(Hydroxycarbamoyl)propyl]-4-(4- Phenylbuta-1,3-Diyn-1-Yl)benzamide PDB code: 3p3c(A).
		16. Ligand: 5EP × 1 N~2~-{4-[4-(4-Aminophenyl)buta-1,3-Diyn-1-Yl]benzoyl}- N-Hydroxy-L-Isoleucinamide PDB code: 5drp(A).
		17. Ligand: 81V × 1 N-[(2s,3s)-4,4-Difluoro-3-Hydroxy-1-(Hydroxyamino)-3- Methyl-1-Oxobutan-2-Yl]-4-({4-[(Morpholin-4- Yl) methyl]phenyl}ethynyl)benzamide PDB code: 5u86(A).
		18. Ligand: A5F × 1 N-[(2s)-3-Azanyl-3-Methyl-1-(Oxidanylamino)-1- Oxidanylidene-Butan-2-Yl]-4-[4-[(1r,2r)-2- (Hydroxymethyl)cyclopropyl]buta-1,3-Diynyl]benzamide PDB code: 6ih0(A).
		19. Ligand: A5U × 1 Methyl (2s)-2-Azanyl-3-Methyl-3-[(2-Methylpropan-2-Yl) oxycarbonylamino]butanoate PDB code: 6ih0(A).
		20. Ligand: C90 × 1 N-{(1s,2r)-2-Hydroxy-1-[(Hydroxyamino)carbonyl]propyl}- 4-{[4-(Morpholin-4- Ylmethyl)phenyl]ethynyl}benzamide PDB code: 2jt2(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5u86(A).
		2. Ligand: IMD × 1 Imidazole PDB code: 3p76(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 3p3c(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1yhc(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2go3(A), 2ier(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5dro(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5u86(A).