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EBI
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PDBsum
Ligand clusters for UniProt code O38723
Ligand clusters for O38723: Protease (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
5 ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 2i0aA
Structures
PDB
Schematic diagram
2i0a
A
2psu
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
Glycerol
PDB code:
2i0a
(A).
2. Ligand:
MUI × 1
(5s)-3-(4-Acetylphenyl)-N-[(1s,2r)-1-Benzyl-2-Hydroxy- 3-{Isobutyl[(4-
Methoxyphenyl)sulfonyl]amino}propyl]-2- Oxo-1,3-Oxazolidine-5-Carboxamide
PDB code:
2i0a
(A).
3. Ligand:
MUU × 1
N-[(1s,2r)-1-Benzyl-3-{(Cyclopropylmethyl)[(3- Methoxyphenyl)sulfonyl]amino}-2-Hydroxypropyl]-N'-
Methylsuccinamide
PDB code:
2psu
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
2i0a
(A),
2psu
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
2i0a
(A),
2psu
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
acetic acid
Acetate ion
PDB code:
2psu
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
acetic acid
Acetate ion
PDB code:
2psu
(A).