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Ligand clusters for UniProt code O34918

Ligand clusters for O34918: Expansin-YoaJ OS=Bacillus subtilis (strain 168) GN=yoaJ PE=1 SV=1

5 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 3d30A  
JSmol
 

Structures

PDB   Schematic diagram
3d30A    
4fg2A    
4fftA    
4ferA    
4fg4A    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: 0TS × 1
Beta-D-Glucopyranosyl-(1->4)-4-Thio-Beta-D- Glucopyranosyl-(1->4)-Beta-D-Glucopyranosyl-(1->4)-4-
Thio-Beta-D-Glucopyranosyl-(1->4)-1-Thio-Beta-D- Glucopyranose
PDB code: 4fg4(A).


 
2. Ligand: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC × 1
BGC=Beta-D-Glucose.
PDB code: 4fft(A).


 
3. Ligand: CE6 × 1
Cellohexaose
PDB code: 4fer(A).


 
4. Ligand: CTT × 1
Beta-D-Glucopyranosyl-(1->4)-Beta-D-Glucopyranosyl-(1- >4)-Beta-D-Glucopyranosyl-(1->4)-Beta-D-
Glucopyranose
PDB code: 4fg2(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 4fer(A), 4fft(A).


 
2. Ligand: ACY × 1
Acetic acid
PDB code: 4fg2(A).


 
3. Ligand: GOL × 1
Glycerol
PDB code: 4fer(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: ACY × 1
Acetic acid
PDB code: 4fft(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 3d30(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: ACY × 2
Acetic acid
PDB codes: 4fft(A), 4fg2(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 4fer(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACY × 1
Acetic acid
PDB code: 4fer(A).

 

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