Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code O34918
Ligand clusters for O34918: Expansin-YoaJ OS=Bacillus subtilis (strain 168) GN=yoaJ PE=1 SV=1
5 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 3d30A
Structures
PDB
Schematic diagram
3d30
A
4fg2
A
4fft
A
4fer
A
4fg4
A
Cluster 1 contains 4 ligand types
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
0TS × 1
Beta-D-Glucopyranosyl-(1->4)-4-Thio-Beta-D- Glucopyranosyl-(1->4)-Beta-D-Glucopyranosyl-(1->4)-4-
Thio-Beta-D-Glucopyranosyl-(1->4)-1-Thio-Beta-D- Glucopyranose
PDB code:
4fg4
(A).
2. Ligand:
BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC × 1
BGC
=Beta-D-Glucose.
PDB code:
4fft
(A).
3. Ligand:
CE6 × 1
Cellohexaose
PDB code:
4fer
(A).
4. Ligand:
CTT × 1
Beta-D-Glucopyranosyl-(1->4)-Beta-D-Glucopyranosyl-(1- >4)-Beta-D-Glucopyranosyl-(1->4)-Beta-D-
Glucopyranose
PDB code:
4fg2
(A).
Cluster 2 contains 3 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4fer
(A),
4fft
(A).
2. Ligand:
ACY × 1
Acetic acid
PDB code:
4fg2
(A).
3. Ligand:
GOL × 1
Glycerol
PDB code:
4fer
(A).
Cluster 3 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ACY × 1
Acetic acid
PDB code:
4fft
(A).
2. Ligand:
GOL × 1
Glycerol
PDB code:
3d30
(A).
Cluster 4 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ACY × 2
Acetic acid
PDB codes:
4fft
(A),
4fg2
(A).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4fer
(A).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ACY × 1
Acetic acid
PDB code:
4fer
(A).