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PDBsum
Ligand clusters for UniProt code O23939
Ligand clusters for O23939: Ripening-induced protein (Fragment) OS=Fragaria vesca PE=1 SV=1
4 ligand clusters
Cluster 1.
8 ligand types
12 ligands
Cluster 2.
1 ligand type
6 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
6 ligands
Representative protein: 4idaA
Structures
PDB
Schematic diagram
4ida
A
4idc
A
4idf
A
4idd
A
4idb
A
more ...
Cluster 1 contains 8 ligand types
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Ligand
Description
1. Ligand:
NDP × 3
Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate
PDB codes:
4idc
(A),
4idd
(A),
4idf
(A).
2. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
4ida
(A),
4idb
(A).
3. Ligand:
NAP × 2
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB codes:
4idb
(A),
4ide
(A).
4. Ligand:
1XX × 1
(2r)-4-Hydroxy-2,5-Dimethylfuran-3(2h)-One
PDB code:
4idc
(A).
5. Ligand:
2XX × 1
(2r)-2-Ethyl-4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code:
4idd
(A).
6. Ligand:
3XX × 1
(2e)-2-Ethylidene-4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code:
4ide
(A).
7. Ligand:
4XX × 1
4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code:
4idf
(A).
8. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4ida
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 6
Sulfate ion
PDB codes:
4ida
(A),
4idb
(A),
4idc
(A),
4idd
(A),
4ide
(A),
4idf
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 6
1,2-Ethanediol
PDB codes:
4ida
(A),
4idb
(A),
4idc
(A),
4idd
(A),
4ide
(A),
4idf
(A).
Cluster 4 contains 1 ligand type
Selection shortcuts:
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Ligand
Description
1. Ligand:
EDO × 6
1,2-Ethanediol
PDB codes:
4ida
(A),
4idb
(A),
4idc
(A),
4idd
(A),
4ide
(A),
4idf
(A).