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Ligand clusters for UniProt code O23939

Ligand clusters for O23939: Ripening-induced protein (Fragment) OS=Fragaria vesca PE=1 SV=1

4 ligand clusters
Cluster 1.
8 ligand types
12 ligands
Cluster 2.
1 ligand type
6 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
6 ligands
Representative protein: 4idaA  
JSmol
 

Structures

PDB   Schematic diagram
4idaA    
4idcA    
4idfA    
4iddA    
4idbA    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: NDP × 3
Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate
PDB codes: 4idc(A), 4idd(A), 4idf(A).


 
2. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4ida(A), 4idb(A).


 
3. Ligand: NAP × 2
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB codes: 4idb(A), 4ide(A).


 
4. Ligand: 1XX × 1
(2r)-4-Hydroxy-2,5-Dimethylfuran-3(2h)-One
PDB code: 4idc(A).


 
5. Ligand: 2XX × 1
(2r)-2-Ethyl-4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code: 4idd(A).


 
6. Ligand: 3XX × 1
(2e)-2-Ethylidene-4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code: 4ide(A).


 
7. Ligand: 4XX × 1
4-Hydroxy-5-Methylfuran-3(2h)-One
PDB code: 4idf(A).


 
8. Ligand: SO4 × 1
Sulfate ion
PDB code: 4ida(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 6
Sulfate ion
PDB codes: 4ida(A), 4idb(A), 4idc(A), 4idd(A), 4ide(A), 4idf(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 6
1,2-Ethanediol
PDB codes: 4ida(A), 4idb(A), 4idc(A), 4idd(A), 4ide(A), 4idf(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 6
1,2-Ethanediol
PDB codes: 4ida(A), 4idb(A), 4idc(A), 4idd(A), 4ide(A), 4idf(A).

 

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