Ligand clusters for UniProt code D9J2T9

Ligand clusters for D9J2T9: rRNA N-glycosidase (Fragment) from Momordica balsamina

		Top 6 (of 7) ligand clusters Cluster 1. 40 ligand types 58 ligands Cluster 2. 1 ligand type 2 ligands Cluster 3. 2 ligand types 60 ligands Cluster 4. 4 ligand types 30 ligands Cluster 5. 1 ligand type 39 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 3mrwA

Structures

PDB		Schematic diagram
3mrwA
4jtbA
3n31A
4zz6A
3u6zA
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Cluster 1 contains 40 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: ADE × 4 adenine Adenine PDB codes: 3rl9(A), 3u6z(A), 3u70(A), 3v2k(A).
		2. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4fxa(A), 4g2x(A), 5cso(A).
		3. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4dwm(A), 4rzj(A).
		4. Ligand: 211 × 1 trolamine 2,2',2''-Nitrilotriethanol PDB code: 5cix(A).
		5. Ligand: ASC × 1 ascorbic acid Ascorbic acid PDB code: 4jtp(A).
		6. Ligand: FRU × 1 fructose Beta-D-Fructofuranose PDB code: 3nfm(A).
		7. Ligand: KAN × 1 kanamycin Kanamycin a PDB code: 3u6t(A).
		8. Ligand: URF × 1 fluorouracil 5-Fluorouracil PDB code: 4o0o(A).
		9. Ligand: CDP × 3 Cytidine-5'-Diphosphate PDB codes: 4k6p(A), 4qgj(A), 5cst(A).
		10. Ligand: URA × 3 Uracil PDB codes: 4kpv(A), 5ilx(A), 5y48(A).
		11. Ligand: CTN × 2 4-Amino-1-Beta-D-Ribofuranosyl-2(1h)-Pyrimidinone PDB codes: 4g2x(A), 5cso(A).
		12. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5gz7(A), 5ilx(A).
		13. Ligand: ETN × 2 Methylethylamine PDB codes: 4k2z(A),
		14. Ligand: GUN × 2 Guanine PDB codes: 3n1n(A), 3n3x(A).
		15. Ligand: M7G × 2 7n-Methyl-8-Hydroguanosine-5'-Diphosphate PDB codes: 3q4p(A), 4emf(A).
		16. Ligand: MGP × 2 7-Methyl-Guanosine-5'-Triphosphate PDB codes: 3qji(A), 4emr(A).
		17. Ligand: MY6 × 2 2-Amino-7-Methyl-1,7-Dihydro-6h-Purin-6-One PDB codes: 4f9n(A), 4i47(A).
		18. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 3mrw(A), 4kl4(A).
		19. Ligand: 5GP × 1 Guanosine-5'-Monophosphate PDB code: 4q9f(A).
		20. Ligand: AAG × 1 N-Alpha-L-Acetyl-Arginine PDB code: 4fxa(A).
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Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SER-ASP-ASP-ASP-MET-GLY × 2 PDB codes: 3n2d(A), 3n3x(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 47 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3q4p(A), 3rl9(A), 3s9q(A), 3sj6(A), 3u6t(A), 3u6z(A), 3u70(A), 3v14(A), 3v2k(A), 4dwm(A), 4emf(A), 4fxa(A), 4fz9(A), 4g2x(A), 4h0z(A), 4jtb(A), 4jtp(A), 4k2z(A), 4k6p(A), 4kl4(A), 4kmk(A), 4kpv(A), 4kwn(A), 4l66(A), 4lro(A), 4lt4(A), 4lwx(A), 4m5a(A), 4o0o(A), 4o4q(A), 4o8e(A), 4q9f(A), 4qgj(A), 4rzj(A), 4xy7(A), 4zt8(A), 4zu0(A), 4zz6(A), 5cix(A), 5cso(A), 5cst(A), 5gm7(A), 5gz7(A), 5ilw(A), 5ilx(A), 5wv1(A), 5y48(A).
		2. Ligand: NAG-NAG × 13 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3mrw(A), 3n1n(A), 3n2d(A), 3n31(A), 3n3x(A), 3nfm(A), 3qji(A), 3u8f(A), 4emr(A), 4f9n(A), 4guw(A), 4hoa(A), 4i47(A).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 26 glycerin Glycerol PDB codes: 3s9q(A), 3sj6(A), 4dwm(A), 4emf(A), 4fz9(A), 4g2x(A), 4k2z(A), 4k6p(A), 4kmk(A), 4kwn(A), 4l66(A), 4lro(A), 4lt4(A), 4lwx(A), 4o4q(A), 4o8e(A), 4qgj(A), 4rzj(A), 4xy7(A), 4zt8(A), 4zu0(A), 4zz6(A), 5cso(A), 5cst(A), 5gz7(A), 5wv1(A).
		2. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 3q4p(A), 4guw(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 5gm7(A).
		4. Ligand: PO4 × 1 Phosphate ion PDB code: 5cix(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 39 glycerin Glycerol PDB codes: 3mrw(A), 3n31(A), 3nfm(A), 3q4p(A), 3rl9(A), 3s9q(A), 3sj6(A), 3u6t(A), 3u6z(A), 3u70(A), 3u8f(A), 3v14(A), 3v2k(A), 4dwm(A), 4emf(A), 4fxa(A), 4fz9(A), 4hoa(A), 4k2z(A), 4k6p(A), 4kmk(A), 4kwn(A), 4l66(A), 4lro(A), 4lt4(A), 4lwx(A), 4o0o(A), 4o4q(A), 4o8e(A), 4q9f(A), 4qgj(A), 4rzj(A), 4xy7(A), 4zt8(A), 4zu0(A), 4zz6(A), 5cst(A), 5gz7(A), 5ilw(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4kl4(A).