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Ligand clusters for UniProt code D5X329

Ligand clusters for D5X329: Nitrogen regulatory protein P-II OS=Thiomonas intermedia (strain K12) OX=75379 GN=Tint_0114 PE=1 SV=1

4 ligand clusters
Cluster 1.
2 ligand types
8 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
3 ligand types
5 ligands
Cluster 4.
2 ligand types
5 ligands
Representative protein: 5d4oA  
JSmol
 

Structures

PDB   Schematic diagram
5d4oA    
5drkB    
5ds7B    
5d4nA    
5d4oB    
 more ...

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: AMP × 5
Adenosine monophosphate
PDB codes: 5d4n(B), 5d4o(B), 5drk(A), 5ds7(A),


 
2. Ligand: ADP × 3
Adenosine-5'-Diphosphate
PDB codes: 5d4n(A), 5d4o(A), 5drk(B).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: AMP × 5
Adenosine monophosphate
PDB codes: 5d4n(A), 5d4o(A), 5drk(B), 5ds7(A),


 
2. Ligand: ADP × 2
Adenosine-5'-Diphosphate
PDB codes: 5d4n(C), 5drk(C).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: ACT × 2
Acetate ion
PDB codes: 5d4n(A),


 
2. Ligand: BCT × 2
Bicarbonate ion
PDB codes: 5d4o(A), 5drk(B).

_Cl
 
3. Metal: _CL × 1
PDB code: 5ds7(B).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: BCT × 3
Bicarbonate ion
PDB codes: 5d4o(A), 5drk(A).


 
2. Ligand: ACT × 2
Acetate ion
PDB codes: 5d4n(A),

 

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