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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code D3YEX6
Ligand clusters for D3YEX6: Cinnamoyl esterase OS=Lactobacillus johnsonii PE=1 SV=1
Top 6 (of 35) ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3pf9A
Structures
PDB
Schematic diagram
3pf9
A
3pfb
A
3s2z
A
3qm1
A
3pfc
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
ZYC × 2
Ethyl (2e)-3-(4-Hydroxy-3-Methoxyphenyl)prop-2-Enoate
PDB codes:
3pfb
(A),
3qm1
(A).
2. Ligand:
DHC × 1
Caffeic acid
PDB code:
3s2z
(A).
3. Ligand:
FER × 1
3-(4-Hydroxy-3-Methoxyphenyl)-2-Propenoic acid
PDB code:
3pfc
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
3qm1
(A).
_Na
2. Metal:
_NA × 1
PDB code:
3pf9
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
_Na
1. Metal:
_NA × 3
PDB codes:
3pf9
(A),
3qm1
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
3s2z
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
_Na
1. Metal:
_NA × 2
PDB codes:
3pfc
(A),
3qm1
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
3s2z
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
3pfb
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
3pfc
(A).